Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24270 81 / 3e-18 unknown protein AT5G13090 76 / 6e-16 unknown protein AT1G62422 69 / 9e-14 unknown protein AT1G12020 66 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003131 [exp] 158 / 2e-47 AT1G24270 87 / 2e-20 unknown protein Lus10031521 [exp] 58 / 6e-10 AT1G62422 125 / 4e-36 unknown protein Lus10029957 [exp] 58 / 1e-09 AT1G62422 141 / 2e-42 unknown protein Lus10015161 [exp] 48 / 9e-07 AT1G62422 97 / 8e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059400 [exp] 99 / 3e-24 AT5G13090 119 / 8e-32 unknown protein Potri.003G168500 [exp] 98 / 1e-23 AT5G13090 100 / 1e-24 unknown protein Potri.012G101200 [exp] 78 / 1e-16 AT5G13090 93 / 2e-22 unknown protein Potri.015G099400 [exp] 73 / 1e-14 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1) Potri.011G022900 [exp] 71 / 2e-14 AT1G12020 115 / 2e-31 unknown protein Potri.004G001800 [exp] 71 / 2e-14 AT1G12020 135 / 3e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011343 pacid=23159199 polypeptide=Lus10011343 locus=Lus10011343.g ID=Lus10011343.BGIv1.0 annot-version=v1.0 ATGAAACTCAAAAACAAAGGCAAAAAGGTCTTCCCTTCCCCCTCCTCCTCCTCCGCCTCCGCCGCTTCCTCCTCCCCCGACGATGTCCCCTCCATCCTCA AACTCCTCCCGGCCGCCATCCTCGCCCTCGCCACCGTCCTCTCCATCGAAGACCGTGAAGTCCTCGCCTACATGATTACCATGTCCCTCAAATCCACTTC CTCCTCTTCCTCTTCCGCCGCCCCGAACAAGAAACCCGCCAAGAAACCGGCCAAGAAATCAGCCGCCGCCACCGTCACCAACAGCAGCTCGAATCCTCCT CACAAGGCTCCGGTGTTCGGCTGTGACTGCTTCGACTGCTACAGGAGCTACTGGTTCCGCTGGGACTCCTCCGCCAACCGAGAGCTCATCCACCAAGCCA TCGAAGCCTTCGAGGAGCATCTCCTCAGCTCCGAGCAGAACAAATCCAGCTCTGGCAGCAGCAGCAGCAAGAAGAAGAAGATCCGCGACAAAACGGCGCG TCGTTTCACTCCAGCTGACGAAACCAACAAGGAAAAAGACCAGCTCGAGCTGCAGCTTCTTCCAGTCCCATCTCCGCCGTCGCCCCCGCCGCCGCTTGAG GCGGCGTCCGATGAAGCCGAATCCGCTACTTCCACTCCTCAGCTGGTTTCTACTCCCCAGCTGGTGGTTGAGCTGGAGATCCACGACGATGTGGAGGATG AGGTGGAGAAAGCGGTGGTGTCGAGGTCGCCGGCGGGCAGCGGTGGAGGAGTAGGACGGAAGGGGATAGTGAGGAAGGTACTCCCGGACGTGTTAGGGTT ATTGAATTCCCGTTTATGGAGCCTGTGGGGTCCGAACCTGTGA
AA sequence Show only first row Show all	>Lus10011343 pacid=23159199 polypeptide=Lus10011343 locus=Lus10011343.g ID=Lus10011343.BGIv1.0 annot-version=v1.0 MKLKNKGKKVFPSPSSSSASAASSSPDDVPSILKLLPAAILALATVLSIEDREVLAYMITMSLKSTSSSSSSAAPNKKPAKKPAKKSAAATVTNSSSNPP HKAPVFGCDCFDCYRSYWFRWDSSANRELIHQAIEAFEEHLLSSEQNKSSSGSSSSKKKKIRDKTARRFTPADETNKEKDQLELQLLPVPSPPSPPPPLE AASDEAESATSTPQLVSTPQLVVELEIHDDVEDEVEKAVVSRSPAGSGGGVGRKGIVRKVLPDVLGLLNSRLWSLWGPNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13090			unknown protein		Lus10011343 [exp]	0	1
AT4G18230			unknown protein		Lus10024587 [exp]	4.5	0.6771
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	6.9	0.6917
AT1G20460			unknown protein		Lus10034569 [exp]	7.5	0.6250
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	9.1	0.6836
AT1G16840			unknown protein		Lus10034821 [exp]	12.2	0.6547
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	19.1	0.6814
AT1G71980			Protease-associated (PA) RING/...		Lus10009438 [exp]	22.8	0.6746
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	23.9	0.6516
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	30.7	0.6577
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	32.8	0.6183

Compare expression of checked genes

Lus10011343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.