Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 1845 / 0 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 1490 / 0 Transcription elongation factor Spt6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003130 [exp] 2614 / 0 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029079 [exp] 1745 / 0 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029085 [exp] 843 / 0 AT1G65440 761 / 0.0 global transcription factor group B1 (.1.2.3) Lus10034231 [exp] 459 / 4e-144 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3) Lus10029034 [exp] 440 / 3e-142 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3) Lus10013071 [exp] 303 / 1e-87 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10029078 [exp] 158 / 2e-44 AT1G65440 150 / 5e-43 global transcription factor group B1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029200 [exp] 2014 / 0 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.006G031900 [exp] 2011 / 0 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3) Potri.001G034300 [exp] 1248 / 0 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011344 pacid=23159274 polypeptide=Lus10011344 locus=Lus10011344.g ID=Lus10011344.BGIv1.0 annot-version=v1.0 ATGGAGTTCGATGACGACGACAGGGAGCCGGAGGAAAGAGGCGCTGGTGATGATGACGAGGAGGAGGATGAAGAAGGGCAGGACGAGTATGAAAAGGACG ATTTTATAGTGGACGATGTTGAAGAAGAACCTGACGAAGAAGAAGAAGAGAGGGCGGACAGTGATGAGGAACGGCAAAGGAAGAAGAAGAAGAAGAAGAA ACGAGAGGCTGAGGTTCTCGATGATGAAGACTACGAGCTTCTATTGGATAATAATGCCATACAACGACGACCACCCAAGGATAGCAAAAAGTTTAAAAGG CTTAAAAAGGCTCAACGGGATACAGATGGTGATAATGAGTTCTCAGACGAGGAGTTTGATGGAAGTGGTAAGGGTGGGCGGACTGCTGAGGAAAAAATTA AGCGCAGCTTATTCGGTGATTATGAAGGAAACAATCTAGAGGATATTGCTGAAGAAGAGGAACGAATAGAAGAGGAGGAAGATGTTGAAGTTGGGGATGA GGATGAGATGGCTGATTTCATCGTTGATGAAGAAGAAATTGACGAGAATGGACTTCCGGTTAGGCGTACGAAGGTGAAGAGAAAGAAATCAAGGCAAGCA TTTGGTGCTTCGTCTTCTGCTTTGCAGGAAGCTCATGAGATATTTGGCGATGTGGATGAGCTCTTACAGCTGCGTAAGCAACAAGCGAAAGATTCTGCTG AACAGCAGGAAAGGCGATTGGAAGATGAATTCGAGCCTACGGTACTTGCTGAGAAATACATGACTGAGAAAGATGATGCGATTCGACAAACCGACATTCC CGAAAGGATGCAGATATTAGAGGAGACTACTGGCCCGCCTCCAGTTAATGCAGACAGTTTAGATGATGAAAGCACGTGGATTTATAATCAGCTAGCAAGT GGTGTTGCGTCTCTACAAGGTCTTACTGCGTCTCTACAGGATCTAAACAGCAATAAGGATGCGGTCGAGCGGTTTAAGGATGAGATTAGCCGTTTTTTGG ATTTTCACCACGTGCAAAAGTTGGATATCCCGTTCATTGCCACATACCGGAAAGATGAGTGCTCTAGCCTCTTCAAAGATCCTGAGCAACTCAAGTCCGA TTACGACAATCAGGATGACAATGACCGGCCGCCAAAATTGAAGTGGCATAAGGTGGTTTCGGCAATTCAGGACTTGGATAGGAAGTGGCTACTTCTCCAA AAGAGGAAGAGTGCTCTCCGCTTGTACTACCGCAAGCGATATGACGAAGAATCTATGCGAATTTATGACGAGACGAGACTTAATTTGAACCAGCGCCTTT TCAAGTCCATTATTAAGTCGCTTGAGGCTGCCGAATCAGAACGAGAAGTTGATGATGTTGATGCAAAGTTTAACTTGCACTTCCCGCCTGGTGAGGTCGG TGCCAATGAAGGACAATATAAGAGACCGAAAAGGAAATCTACATATAGTACCTGCAACAAGGCTGGTCTATGGGAAGTTGCCAATAAGTTTGGTCGTAGT GCTGAGCAGCTTGGACGGCACTTGTCACTGTTGGAGATGGGTGTTGATTTGGAGGATGCCAAGGAAGCACCTGAAGAGATGGCTTCGAACTTTACATGTA GAATGTTTGAAACTCCAGACGCTGTTCTTAAAGGTGCCAGGCACATGGCTGCCGTCGAGATAAGTTGCGAGCCATACGTCAGAAAACACGTCCGTGCTGC TTACATGGAGAATGCAGTCGTATCCACCAGTCCAACTTCCGACGGAAACTCAACAATAGATTCATTCCACCAGTTTTACGGAGTGAAATGGCTGCGTGAA AAACCAGTCAGCGAGTTCAAGGACGCACAATGGCTTCTCATCCAAAAGGCCGAAGAAGAGAAGCTTCTTCAAGTCACCTTCAAGCTACCGGAAAAACGTA TGGACGAATTAGTCACCGAATGCAAAGATCATTATCTTAGCGACGGCGTCAGTAAATCCGCCCAGTTATGGAACGAACAAAGGCAGCTAATCTTGAAGGA CGCTCTCTTCGGGTTTCTTATGCCTTCTATGGAGAAAGAAGCGAGATCGTTGCTTACAAGCAGAGCCAAAAGGTGGCTACTCTGGGAATACGGGCAAGTC TTGTGGAATAAAGTATCGGTCGGCCCGTATCAGAGGAAAGAAAATGACCGGTCTGCGGATGATGAAGCTGCACCGAGGGTCATGGCTTGCTGTTGGGGCC CCGGAAAACCTGCGACGACGTTTGTTATGTTGGATTCGGCCGGGGAGGTGCTGGACGTGCTGTATACTGGTTCGCTTACGTTACGTTCTCAAAATGTTGA TGACCAGCAAAGGAAGAAAAATGATCAGCAGCGAGTTTTGAAGTTTATGATGGATCATCAACCGCATGTGGTCGCTCTAGGGGCTGTCAATTTGTCTTGT ACAAAACTGAAGGAAGATATCTACGAGATTATTTTTAAGATGGTGGAAGAAAATCCCAGAGATGTGGGACACGATATGGACGAATTAAGCATTTTATATG GCGACGAGTCTCTTCCACGCCTTTACGAGAATTCCCGAATTTCGTCTGATCAACTACCTTCACAATCAGGGATCGTTAAAAAGGCCGTTGCTCTCGGACG CTATCTTCAAAACCCTTTGGCAATGGCGGCAACTCTCTGTGGACCTGAAAGAGAGATCCTATCTTGGAAGCTAAATCCTTTAGAGAGCTTTCTCACACCT GACGAAAAGTACGCAATGGTAGAACAGGTTATGGTGGACGTCACGAACCAGGTCGGGTTCGACGTGAACCTGGCAATAGGTCACGAATGGTTATTCTCTC CTCTGCAGTTTATATCCGGTCTTGGACCGAGGAAAGCAGCTTCTCTGCAGAGATCCCTCGTAAGAGCCGGTGGGATTTACACGAGGAAAGACTTTGTTAC AATCCACGACCTCGGCAAAAAGGTATTCGTCAACGCTGTCGGTTTTTTGCGAGTTCGGCGGAGTGGCCTGGCAGCTAGCAGCAGTCAGTTTATCGATTTG TTGGACGACACGAGGATTCACCCAGAATCATACGGGCTCGCTCAGGACTTGGCCAAAGATATGTACGAACTCGATAATGTTGATGCAAATGATGACGACG ATCTCGAAATGGCAATCGAGCATGTTCGGGATCACCCTTCGAGGTTGAGAAACCTGACTATTGATCAGTATCTTCTTGACAAGGGCATGCTGAATAAAAC GGAGACGTTGAAGGATATAAGACGAGAATTGATACACGGTTTCCAGGATTGGCGGAAACCGTATAAAGAGCCGAGCCAAGAGGAAGAGTTTTACATGATT TCCGGAGAGACGGAAGATACTGTTGCGGAGGGTAGAATCGTCCAAGCCACTGTCCGGAGGATCGTGAATGGTTCGAAAGCGATATGTTCTCTTGAATCTG GATTGACGGGGATACTTATGAAGGAAGATTATGGTGATGACTCGAGGGATAATTCAGAGTTGTCGGATAGGCTCCGTGAAGGCGATATACTCACGTGCAG GATAAAATCTGTTCAGATGAACAGATACCAGGCTTACATAGCTTGTAAAGAGAGTGAGATGAGGAATAATAACCGGTACCAGCCGGTTCGAGATCTCGAC CCTTATTACCATGAAGATACAGTCAGCTTGCAGAGTGACCAGGAGAAGGCTCGTAAAGAGAAGGACCTTGCGAAGAAGCATTTCAAACCAAGGATGATCG TGCATCCTCAGTTCCAGAATATTACGTCGGATGAAGCTATGGAGTATTTGGCTGATATGGAGCCTGGGGCAAGCATTATTCGTCCAAGTTCTCGTGGCCC CTCATTTCTGACTCTTACTCTGAAAGTCTACAATGGAGTTTATGCCCACAAAGACATAGTTGAGGGGGGTAAAGAGCACAAGGACATCACAAGCCTTCTA CGTATCGGGAAGACACTGAAAATCGGGGAGGACACTTTCGAGGATTTGGACGAGGTAATCGATAGGTATGTCGATCCTCTTGTGGTCCACCTGAAAACTA TGCTGAACTACCGAAAGTTCCGAAGGGGAACAAAGGCGGAAGTGGACGAGCTCCTGAAGATCGAGAAAGCAGAGTATCCCATGAGGATAGTCTACTGCTT TGGCATATCTCATGAGCACCCGGGGACTTTCATTCTGACGTATATAAGGAGTACGAATCCACATCATGAGTACGTAGGCCTCTACCCGAAGGGATTCAAG TTCCGGAAGAAGATGTTTGAGGACATCGACAGGCTCGTCAATTACTTCCAAAAGCACATCGATGATCACCCGCAAGAATCAGGGCCGTCGATTAGATCGA TGGCTGCCATGGTGCCGATGAGGAGCTCCACTCCCGGAGGAGGGTCTTCGGGAGATGGTGGTTGGGGTGGTGGTGGGTCGAACAATGATGGTGGTGGATG GAGAGGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNTAGCGGCGGTGCTGCTGCTGCAGCTGAGGATGGGAACTCAGGGTGGGGTGGTGGTTCGAAGGCGGGATCAAACAGCGATGGTTGGGGTGGT GGAGCCAGCACCGGCGGCGGTGGCAGTGCTTGGTGA
AA sequence Show only first row Show all	>Lus10011344 pacid=23159274 polypeptide=Lus10011344 locus=Lus10011344.g ID=Lus10011344.BGIv1.0 annot-version=v1.0 MEFDDDDREPEERGAGDDDEEEDEEGQDEYEKDDFIVDDVEEEPDEEEEERADSDEERQRKKKKKKKREAEVLDDEDYELLLDNNAIQRRPPKDSKKFKR LKKAQRDTDGDNEFSDEEFDGSGKGGRTAEEKIKRSLFGDYEGNNLEDIAEEEERIEEEEDVEVGDEDEMADFIVDEEEIDENGLPVRRTKVKRKKSRQA FGASSSALQEAHEIFGDVDELLQLRKQQAKDSAEQQERRLEDEFEPTVLAEKYMTEKDDAIRQTDIPERMQILEETTGPPPVNADSLDDESTWIYNQLAS GVASLQGLTASLQDLNSNKDAVERFKDEISRFLDFHHVQKLDIPFIATYRKDECSSLFKDPEQLKSDYDNQDDNDRPPKLKWHKVVSAIQDLDRKWLLLQ KRKSALRLYYRKRYDEESMRIYDETRLNLNQRLFKSIIKSLEAAESEREVDDVDAKFNLHFPPGEVGANEGQYKRPKRKSTYSTCNKAGLWEVANKFGRS AEQLGRHLSLLEMGVDLEDAKEAPEEMASNFTCRMFETPDAVLKGARHMAAVEISCEPYVRKHVRAAYMENAVVSTSPTSDGNSTIDSFHQFYGVKWLRE KPVSEFKDAQWLLIQKAEEEKLLQVTFKLPEKRMDELVTECKDHYLSDGVSKSAQLWNEQRQLILKDALFGFLMPSMEKEARSLLTSRAKRWLLWEYGQV LWNKVSVGPYQRKENDRSADDEAAPRVMACCWGPGKPATTFVMLDSAGEVLDVLYTGSLTLRSQNVDDQQRKKNDQQRVLKFMMDHQPHVVALGAVNLSC TKLKEDIYEIIFKMVEENPRDVGHDMDELSILYGDESLPRLYENSRISSDQLPSQSGIVKKAVALGRYLQNPLAMAATLCGPEREILSWKLNPLESFLTP DEKYAMVEQVMVDVTNQVGFDVNLAIGHEWLFSPLQFISGLGPRKAASLQRSLVRAGGIYTRKDFVTIHDLGKKVFVNAVGFLRVRRSGLAASSSQFIDL LDDTRIHPESYGLAQDLAKDMYELDNVDANDDDDLEMAIEHVRDHPSRLRNLTIDQYLLDKGMLNKTETLKDIRRELIHGFQDWRKPYKEPSQEEEFYMI SGETEDTVAEGRIVQATVRRIVNGSKAICSLESGLTGILMKEDYGDDSRDNSELSDRLREGDILTCRIKSVQMNRYQAYIACKESEMRNNNRYQPVRDLD PYYHEDTVSLQSDQEKARKEKDLAKKHFKPRMIVHPQFQNITSDEAMEYLADMEPGASIIRPSSRGPSFLTLTLKVYNGVYAHKDIVEGGKEHKDITSLL RIGKTLKIGEDTFEDLDEVIDRYVDPLVVHLKTMLNYRKFRRGTKAEVDELLKIEKAEYPMRIVYCFGISHEHPGTFILTYIRSTNPHHEYVGLYPKGFK FRKKMFEDIDRLVNYFQKHIDDHPQESGPSIRSMAAMVPMRSSTPGGGSSGDGGWGGGGSNNDGGGWRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAAAAAEDGNSGWGGGSKAGSNSDGWGG GASTGGGGSAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	0	1
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	2.0	0.9252
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	2.4	0.9274
AT5G05520			Outer membrane OMP85 family pr...		Lus10009835 [exp]	9.4	0.8861
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	9.5	0.8986
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	10.4	0.9198
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10038504 [exp]	10.9	0.8799
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	12.2	0.9205
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	12.2	0.9035
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	12.5	0.9166
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	15.5	0.8873

Compare expression of checked genes

Lus10011344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.