Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27980 788 / 0 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1) AT5G17330 79 / 2e-15 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT3G17760 78 / 5e-15 GAD5 glutamate decarboxylase 5 (.1.2) AT1G65960 75 / 5e-14 GAD2 glutamate decarboxylase 2 (.1.2) AT2G02010 71 / 9e-13 GAD4 glutamate decarboxylase 4 (.1) AT2G02000 69 / 3e-12 GAD3 glutamate decarboxylase 3 (.1) AT2G20340 45 / 0.0002 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 44 / 0.0004 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003129 [exp] 1013 / 0 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10028530 [exp] 73 / 2e-13 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10019136 [exp] 72 / 8e-13 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10035096 [exp] 69 / 4e-12 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10034425 [exp] 58 / 1e-08 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10022856 [exp] 47 / 4e-05 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168800 [exp] 841 / 0 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1) Potri.001G059001 [exp] 121 / 8e-33 AT1G27980 127 / 5e-36 dihydrosphingosine phosphate lyase (.1) Potri.004G075200 [exp] 75 / 5e-14 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 74 / 1e-13 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.017G144421 [exp] 72 / 4e-13 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.012G039000 [exp] 70 / 2e-12 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.010G100500 [exp] 67 / 2e-11 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.008G141100 [exp] 66 / 5e-11 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.002G255600 [exp] 44 / 0.0003 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10011345 pacid=23159196 polypeptide=Lus10011345 locus=Lus10011345.g ID=Lus10011345.BGIv1.0 annot-version=v1.0 ATGGATATCGAAACAGTGAAGTCGTCGCTGGTTCGTCTCAGAGGTTCCGCCAATTCATTTCTGTCGGAGTACGAGCCGCTGACTCTGCTTCTAGCTCCTC TACTTACACTCGTGGTTGCTCGTGCTGTTCATTCGCTGCTTCGTAGCGTGCAGGACAATGGAGTCAAAGCTATGGTCGTCGGGTTGGTCATGAGCTCGAT CAAGTTGGTGCCAGGAGTCCAGAGTTATATCGATGCCGAGAAACAGAAGGTAGTTGACAAGATGCAGTCTGGTACCAAATCCAAACGAGAAGGCTGGTTG ACAGAGTTGCCTAAAGAAGGCCTGGGGCCGCAAGTGATTGAAAAACTGAAAGCAGAGAAAGATAAGGATGTCGATTGGCGGGGAAAATGCTCTGGTACCG TTTACATTGGCGGAGCTGAATCTGAGGGCCATTTTGCTGTGATAAATGAGGCCTGTTCAATGTTTGCACATACGAATCCATTGCACTTGGACGTGTTCCC AAGTGTCGCTCGGTTCGAGGCAGAAGTTGTGGCAATGACGGCTGCCCTGCTTGGAAGTCGAGAAAAAGCTTCTGGAGGAGAGGTATGTGGGAACATGACA TCAGGTGGAACGGAAAGTATTTTGCTGGCTATGAAAACATCTCGAGACTATATGAAGGCTAAGAAGGGAATTACAAATCCTGAAATGATAATACCTGTAT CAGCTCACTCAGCTTATGACAAGGCTGCACAATATTTTAACATCAAGCTCTGGCGGGTTCCTGTAAATAAAGATTTTCAAGCGGATGTTAAAGCTATAAG AAGGCACATTAGCCGGAACACTATTTTGATTGTTGGTTCTGCCCCTGGGTTTCCTCATGGTGTCATTGATCCCATTGAGGAGCTTGGACAGTTAGCTTCT AGCCATGGAATATGTCTGCATGTTGACCTTTGCCTTGGAGGATTTGTGCTACCTTTTGCCTGTATGCTCGGGCATTCTTTCAGTACCAGTAGCTTCAATT GTTCATACAGAAGTTTATGTTTGCCTCGTCGACCTGCAATTTATAGTCTGGAACTTGTCTTACTCAGGTACCCAATTCCACCTTTCGACTTTACCGTTGC AGGGGTGACATCAGTATCAGTGGATGTACACAAATACGGACTGGCCCCAAAAGGAACAAGCGTAGTTCTCTACAGAAATCATGAAATTAGAAAGGTGAAC TACTGTGACCACTTATCCTTGAATGCTGTTATCGTGTATCACTTTCGGAAACCATTGAATGCTGATATGGGTTCCCTTGGCATGGCTTCATTCTGCTGGC TATCCACTTTGCTACAGCATCAATTTGTTGCTGTTACAGAATGGTCAGGTGGCCTCTACGTGTCTCCTACTATTGCTGGAAGCAGGCCAGGGAGTTTGAT TGCTGGAGCTTGGGCAGCAATGATTTCTCTCGGGCGGCAGGGGTACTTGCAGCACACAAAGGCCATAATGGAGGTATCAAAGCAACTACAGAACGGGTTG AAAGACATCCCTGAGCTATTCATCATCGGAAAACCAGACATGACAATCGTTGCATTTGGATCCGACGTCGTGGATATATTCGAAGTCAATGACATCATGT CATCAAAAGGCTGGCATCTTAACGCTTTGCAGAGACCCAACAGTCTCCATATCTGCCTCACACTCCAACACGTATCGATTCACGAGGACTTCCTCGCTGA TTTGAAAGAATCAGTAAAGACTGTGAAGGCGAATCCGGGTCCAGTCAAAGGAGGGATGGCTCCAATCTATGGTGCTGCTGGGAAGATGCCAGATAGAGGA ATGGTTCAGGATTTGCTGGTTGATTATATGGATGGTACATGCTAG
AA sequence Show only first row Show all	>Lus10011345 pacid=23159196 polypeptide=Lus10011345 locus=Lus10011345.g ID=Lus10011345.BGIv1.0 annot-version=v1.0 MDIETVKSSLVRLRGSANSFLSEYEPLTLLLAPLLTLVVARAVHSLLRSVQDNGVKAMVVGLVMSSIKLVPGVQSYIDAEKQKVVDKMQSGTKSKREGWL TELPKEGLGPQVIEKLKAEKDKDVDWRGKCSGTVYIGGAESEGHFAVINEACSMFAHTNPLHLDVFPSVARFEAEVVAMTAALLGSREKASGGEVCGNMT SGGTESILLAMKTSRDYMKAKKGITNPEMIIPVSAHSAYDKAAQYFNIKLWRVPVNKDFQADVKAIRRHISRNTILIVGSAPGFPHGVIDPIEELGQLAS SHGICLHVDLCLGGFVLPFACMLGHSFSTSSFNCSYRSLCLPRRPAIYSLELVLLRYPIPPFDFTVAGVTSVSVDVHKYGLAPKGTSVVLYRNHEIRKVN YCDHLSLNAVIVYHFRKPLNADMGSLGMASFCWLSTLLQHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMISLGRQGYLQHTKAIMEVSKQLQNGL KDIPELFIIGKPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNALQRPNSLHICLTLQHVSIHEDFLADLKESVKTVKANPGPVKGGMAPIYGAAGKMPDRG MVQDLLVDYMDGTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	0	1
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	5.0	0.9656
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	5.7	0.9642
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10008898 [exp]	6.2	0.9490
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	7.5	0.9527
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	9.8	0.9566
					Lus10017917 [exp]	10.2	0.9626
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	10.6	0.9654
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10033881 [exp]	12.5	0.9391
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	13.2	0.9595
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	13.9	0.9599

Compare expression of checked genes

Lus10011345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.