Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13080 177 / 6e-58 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 153 / 3e-48 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT5G41570 132 / 2e-39 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT1G64000 130 / 1e-38 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT2G46130 122 / 9e-37 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT1G29860 116 / 3e-32 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G49520 114 / 9e-31 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G18170 112 / 2e-30 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G44745 110 / 2e-30 WRKY WRKY12 WRKY family transcription factor (.1) AT2G47260 111 / 7e-30 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003128 [exp] 230 / 2e-78 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10012547 [exp] 176 / 1e-57 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10041546 [exp] 169 / 1e-53 AT5G13080 171 / 1e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10007906 [exp] 136 / 1e-40 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10036401 [exp] 135 / 3e-40 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10017067 [exp] 117 / 6e-32 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 114 / 7e-31 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 112 / 8e-31 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 111 / 3e-30 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066860 [exp] 181 / 1e-58 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G058800 [exp] 179 / 2e-58 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G328000 [exp] 179 / 7e-58 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 174 / 2e-56 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 153 / 8e-48 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G164900 [exp] 141 / 6e-43 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.014G090700 [exp] 140 / 9e-43 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G193000 [exp] 116 / 7e-32 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 117 / 9e-32 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G138900 [exp] 113 / 9e-32 AT2G44745 224 / 9e-75 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10011346 pacid=23159201 polypeptide=Lus10011346 locus=Lus10011346.g ID=Lus10011346.BGIv1.0 annot-version=v1.0 ATGGAGATGAACTATACGGCGTCGCTTTTCCCTTACTCATCGTCGTCGACATCCTCGTCGATCAACGTGATGGATCAAGATCACGACCAATACCATGATG ATCACTATGCGCTGACGATGGCGAAGGATGATCGGACGGAGGAGGAAGCTCCACGAGACGGTGGTGATGATGATCTGAAGGGTGAGAATAAGAAGAAGAA GAAGGTGAAGAAGCCTAAGTATGCTTTCCAGACGAGGAGCCAAGTGGATATACTCGATGATGGGTATCGATGGAGGAAGTATGGCCAAAAGGCTGTTAAA AACAACAAGTTCCCCAGGAGCTACTACAGGTGCACGTACCAAGGGTGCAACGTGAAGAAACAAGTGCAACGATTGACAAAGGATGAATCCATGGTGGTAA CAACCTACGAAGGAAGCCACTCCCATCCAATCGAGAAGTCCACCGACAACTTCGAGCATATCTTGAACCAGATGCACATCTACGCTTCATTTTGA
AA sequence Show only first row Show all	>Lus10011346 pacid=23159201 polypeptide=Lus10011346 locus=Lus10011346.g ID=Lus10011346.BGIv1.0 annot-version=v1.0 MEMNYTASLFPYSSSSTSSSINVMDQDHDQYHDDHYALTMAKDDRTEEEAPRDGGDDDLKGENKKKKKVKKPKYAFQTRSQVDILDDGYRWRKYGQKAVK NNKFPRSYYRCTYQGCNVKKQVQRLTKDESMVVTTYEGSHSHPIEKSTDNFEHILNQMHIYASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	0	1
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	2.0	0.9919
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	4.2	0.9914
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	5.3	0.9889
AT1G17860			Kunitz family trypsin and prot...		Lus10007902 [exp]	7.1	0.9862
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	7.1	0.9908
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	9.4	0.9902
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	9.9	0.9868
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	10.1	0.9890
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	10.4	0.9851
					Lus10032178 [exp]	11.0	0.9899

Compare expression of checked genes

Lus10011346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.