Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24267 149 / 6e-42 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 145 / 2e-40 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G27000 48 / 5e-06 Protein of unknown function (DUF1664) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003127 [exp] 295 / 6e-99 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058700 [exp] 207 / 9e-64 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.003G169200 [exp] 204 / 6e-63 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10011347 pacid=23159203 polypeptide=Lus10011347 locus=Lus10011347.g ID=Lus10011347.BGIv1.0 annot-version=v1.0 ATGGCGCTATCTCTCGGCAAGCTGGTCCTTCTCGGCGGTGCTGGTATTATTGGCGCTGGCACTGTGTTTGCAAAAGATGCTGGAGTGTTCGAGTTGTTTT CTGGAGTTACCAGGGTTTTGAGGCATTTCAAGTCTGACACTGGATCTGTGAAGAAGCCGCAGAATGATTCCTTGATGGCCCAGGTGAATAGTCTGAGGCA GGAACTTCAATTGTTGGCGTCAAACAGACCGGTTACAATCATCACTTCAGCAGGAACAGGTGCTAATAAATATTACATAATCATTGTTATCGGAGTAGTG GGCTATGGCTATGTCTGGTGGAAGGGTTGGAAACTCCCCGATATGATGTTCGCAACAAGGCGTACTTTAACTGATGCCTGCAATTCTGTAGGCCAACAAC TGGATTCTGTCTATTCATCTGTTCGGACTGCTAGGAAGGAGTTATCTGCAGATATTTCGAACTTGGATACTAAGCTGACTGAGGTCGGAGAACTTACAGA TAGCACACAGGAAATAGTTCTCCAACTACGAGACGGATCAGGAAAAATTAGTAACGAGGTTCGACATGTCCGGGACGTTGTTGTAACTCTGGAATCAAAG ATCAACAGAATAGAAGAGAAGCAGAGTAAGTCGATGGCCGGGATCAATGATCTGTTGGTCTTCGCTCACCAGACACAGAACGGATTGATTGAAGATAATA GCCAGACCTCGCCATCCAGTAATCAGATATCATACACATCAAGGAAAGCTTTACCGCCTGCTGCTGCACCATCATCATCAAGCCCTGCTCCCATCGAATC TGCCGAGGTTCAGCAAACTCCCCGCCGAGTCGTGGTATCATCCGCTTCTCAGCAGAGTAATGGTATCTCTTTTGGTAATGGAATCTCTGGAGCTGCTGAG CTCACCGGTCCAAGCACCCCGAGTGGTATTTATGTCTCCGAAGAATCCCCCTCTGAGTCTTCTTCTTCTTCAAGAACCAACGGTGGTTCCTCAGTTCTGC AGCGACAGTCGTTTCTTTCCAGAACTTTCAGCATCACGAGTTCAATGCTCCAGCGACCCGGGCTGAAGTAG
AA sequence Show only first row Show all	>Lus10011347 pacid=23159203 polypeptide=Lus10011347 locus=Lus10011347.g ID=Lus10011347.BGIv1.0 annot-version=v1.0 MALSLGKLVLLGGAGIIGAGTVFAKDAGVFELFSGVTRVLRHFKSDTGSVKKPQNDSLMAQVNSLRQELQLLASNRPVTIITSAGTGANKYYIIIVIGVV GYGYVWWKGWKLPDMMFATRRTLTDACNSVGQQLDSVYSSVRTARKELSADISNLDTKLTEVGELTDSTQEIVLQLRDGSGKISNEVRHVRDVVVTLESK INRIEEKQSKSMAGINDLLVFAHQTQNGLIEDNSQTSPSSNQISYTSRKALPPAAAPSSSSPAPIESAEVQQTPRRVVVSSASQQSNGISFGNGISGAAE LTGPSTPSGIYVSEESPSESSSSSRTNGGSSVLQRQSFLSRTFSITSSMLQRPGLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	1.7	0.9271
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	2.4	0.9259
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	4.2	0.9232
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	5.3	0.9032
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10037680 [exp]	8.9	0.9101
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	12.2	0.9046
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	12.4	0.8995
AT5G52370			unknown protein		Lus10040713 [exp]	12.5	0.9132
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10025329 [exp]	12.6	0.8825
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10025607 [exp]	14.5	0.8361

Compare expression of checked genes

Lus10011347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.