Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24260 127 / 9e-38 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 126 / 3e-37 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT2G03710 123 / 6e-37 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 123 / 4e-36 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G45650 113 / 2e-32 MADS AGL6 AGAMOUS-like 6 (.1) AT4G09960 106 / 5e-30 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G26310 106 / 1e-29 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 105 / 1e-29 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT1G69120 105 / 3e-29 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT4G11880 104 / 3e-29 MADS AGL14 AGAMOUS-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017870 [exp] 130 / 4e-39 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10003125 [exp] 127 / 2e-38 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 128 / 4e-38 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 127 / 2e-37 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003124 [exp] 127 / 2e-37 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034663 [exp] 125 / 6e-37 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10026678 [exp] 124 / 6e-37 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 124 / 8e-37 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034371 [exp] 124 / 2e-36 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058400 [exp] 127 / 7e-38 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169600 [exp] 126 / 2e-37 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G115500 [exp] 125 / 3e-37 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.017G099700 [exp] 122 / 6e-36 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 122 / 8e-36 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 117 / 9e-34 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 111 / 2e-31 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 106 / 1e-29 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.019G077200 [exp] 105 / 1e-29 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.013G104900 [exp] 105 / 2e-29 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10011349 pacid=23159252 polypeptide=Lus10011349 locus=Lus10011349.g ID=Lus10011349.BGIv1.0 annot-version=v1.0 ATGGGTAGAGGTAGGGTTGAGCTAAAGAGAATCGAGAACAAAATCAACCGGCAAGTAACGTTTGCAAAGAGAAGGAATGGTCTATTGAAGAAAGCCTACG AGCTTTCAGTCCTTTGCGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTGTACGAGTTCTGCAGCAGCTCAAGGAAACTCGATCTGGG TTTGCTTTATTTCTTGCCTCCTTTCTATGGATCCAAAGACAAGCTTCCCCAATCCACTTGGCGGATCCAGAATGGTCAGAAATCGAAATCACATAATTTA ACTGGGTTGCAATAG
AA sequence Show only first row Show all	>Lus10011349 pacid=23159252 polypeptide=Lus10011349 locus=Lus10011349.g ID=Lus10011349.BGIv1.0 annot-version=v1.0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRKLDLGLLYFLPPFYGSKDKLPQSTWRIQNGQKSKSHNL TGLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10011349 [exp]	0	1
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	1.0	0.9924
AT3G57440			unknown protein		Lus10031072 [exp]	1.4	0.9870
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	4.9	0.9169
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	5.2	0.9495
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	10.4	0.8581
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	16.5	0.8451
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	19.2	0.8438
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	23.3	0.8355
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	33.0	0.9117
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	34.6	0.8856

Compare expression of checked genes

Lus10011349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.