Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003122 [exp] 102 / 3e-29 AT5G65070 65 / 5e-13 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037038 [exp] 57 / 1e-11 AT5G65060 52 / 1e-08 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011351 pacid=23159191 polypeptide=Lus10011351 locus=Lus10011351.g ID=Lus10011351.BGIv1.0 annot-version=v1.0 ATGGAAAATGAAGAGATAAATTACTCACAGGTTTGGTTTTTGCAGATGCAACTGATGTTGGAACCCTTACAAACACTGCAACAACAGGAGAACAAGCTAA GACAGGAAAACGAGCAGTTGAAAGAACAGATAGCTGCAGCCTCAGCCGCGGCGAAGAATGATAGCAACACTGTCTTAGGCACCATCAAAGGCACGGATCA GCAAAGTGGCTTGGTACAGCCGGCCACTCTGCAATTACTCCATTTGATGTAG
AA sequence Show only first row Show all	>Lus10011351 pacid=23159191 polypeptide=Lus10011351 locus=Lus10011351.g ID=Lus10011351.BGIv1.0 annot-version=v1.0 MENEEINYSQVWFLQMQLMLEPLQTLQQQENKLRQENEQLKEQIAAASAAAKNDSNTVLGTIKGTDQQSGLVQPATLQLLHLM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011351 [exp]	0	1
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	4.5	0.8210
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	8.7	0.8136
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	9.6	0.8102
AT5G61820			unknown protein		Lus10033851 [exp]	11.3	0.8158
					Lus10034297 [exp]	13.9	0.7951
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	14.3	0.8057
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	15.2	0.7813
AT4G03600			unknown protein		Lus10039834 [exp]	19.4	0.8061
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	20.5	0.8042
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	21.5	0.7777

Compare expression of checked genes

Lus10011351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.