Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67310 597 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT3G16940 371 / 3e-113 CAMTA calmodulin binding;transcription regulators (.1) AT2G22300 336 / 1e-98 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 313 / 1e-90 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 306 / 3e-88 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT4G16150 249 / 6e-69 CAMTA calmodulin binding;transcription regulators (.1) AT1G27290 149 / 1e-41 unknown protein AT4G35450 44 / 0.0007 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003119 [exp] 1687 / 0 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10003405 [exp] 335 / 6e-98 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 333 / 2e-95 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10041704 [exp] 311 / 3e-90 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 302 / 3e-87 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10016873 [exp] 273 / 3e-77 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 271 / 3e-76 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 258 / 1e-71 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10003121 [exp] 191 / 8e-56 AT1G27290 152 / 8e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057800 [exp] 901 / 0 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 687 / 0 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.005G075100 [exp] 362 / 1e-107 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 337 / 8e-99 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 332 / 9e-98 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.008G107900 [exp] 286 / 2e-81 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.010G141700 [exp] 283 / 9e-81 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.001G058100 [exp] 162 / 4e-46 AT1G27290 131 / 6e-40 unknown protein Potri.003G170300 [exp] 160 / 1e-45 AT1G27290 129 / 2e-39 unknown protein Potri.008G099733 [exp] 89 / 2e-21 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0159 [flax] [poplar] E-set PF01833 [flax] [poplar] TIG IPT/TIG domain CL0159 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10011352 pacid=23159189 polypeptide=Lus10011352 locus=Lus10011352.g ID=Lus10011352.BGIv1.0 annot-version=v1.0 ATGATGAGGAGGCAGCAGCAGCAACAGGATCAGCACTCGCGTGCTTTCCACGAGCTGACCAATATGGTTTTTAACTTGCTCCGTTCGCCTCCGACGCCGA TCCAGTTCTCCGACCACTTCCCTGCGGCAGTTTCTTCCTCTCCTCCTCCTAGGTCGTTGCGGTCGGCGAAGATCACGCCGGCGGGGTTCGCTTCGCTGCT GCTAGGCGTGTCGCTGGCGATGATGCTGTGTGGATCTGTGACGTTCTTCATCGGGTTCATCTTGATGCCCTGGGTGCTTGGACTGGTGATGGTGTTCTAC GTCGCCGGGATCGTTTCCATGATCGCGATGTTAGGCCGTTCCCTTCTCTGTTTCGCCGCCGGCCCTCCGCCTCCTCCCCGGAAGGACATTCCTGTTTTCC TTTGGATCATCAGATTCCAACTGTCCAATGAAAACCTTGGAGTTCTTATTGGCGAAAGACTGACTGAATCAAAGACTCTGTATCTCTCGTCGAGAATTCT CGAGATGACTCGAATAGTTTCGAGGTTGTTCCCTATTATAGTGAATCAACCAGGTCCTGACCAAGGATATGACATCAATCAATTACTCCAAGAAGCTCAA CATCGTTGGCTGAAGCCTGTGGAGGTGTTCTTTATACTCCAAAATCATGAGAAGTACAAGTTCACTGAAAAAACACCTATAAGGCCATCTGCTGGATCGC TGTTTCTTTACAACAAGAGGGTGACAAGATTTTTCCGTAAGGATGATCATAATTGGCGGAAGAAAAAAGATGGAAGGACTGTCGCTGAAGCACATGAAAA ACTAAAGGTTGGAAATGTTGAAAGGCTGAACTGCTATTACGCACACGGGGAAGAGATCCCACATTTTCAACGACGCAGCTATTGGATGCTAGAACCGCCG TATGACCACGTTGTTCTTGTTCATTATAGAGATATCAACGAGGGAATAACACCTTCTGGATCTCTTGTACAGTCAACTCCAGGAGCCTCCTCCCATCTTG GTCCGAGCCCAAGTTATAATACTACCCCTAATCAAGGATCTACTCAGCCAATTAGTAATTCATATGAACCGTATACAAATTCGTCTAGTCCTGGTTCAAC TGAAGTTACTTCAGAGATACTCATCAAGGGAAATGAGGGGTTTAGTACTACTAAATTTGCTGCTGAAAAGAACGATGTCAATCAATATCTTCGAAGCCTA AAGAAAAATCTAAGCTTGGATGACGACATGGTCACAGGACTCGATCTATTCGACGAAGGACCTTTGAATCATGGGTATGATGACGCCTTTGAGCAGGAAA AGATGACGTCTGCATTGAAGACTGAGCCTGTTGAGGAATTTCAACATTCGCAGTGGCTAAACTTCGATCAAATCAATTACGGAGCAGCTGCTGCTGTTTC GGGCCCTGGAGTTGGGAAATCCGAAGTTCGAGATGTCAATCTGGACAGCTACGGAATGCCATTCAGCCATGGTCAAGCAGACTCCCGGTTGGCCATTGCA CAACACAATAAATTTACGATCCGGAAAATATCTCCAGAGTGGGGTTATTGCAACGAGATTACCAAGGTATTGATAGTCGGATTTTTCCTCTGTGATCCGT CCGAATCTGCATGGACATGCATGTTTGGCGACAAAGAAGTCCCTCTGGAGATCATTCAGGAAGGTGTTTTACAGTGTGCCACCCCTCTGGAGATGCCTCC AGGGAAGGTATCGATTTGTATAACTTCTGGTAATCGACAACCTTGCAGCGAAATAGGGCAGTTCGAATTTCGGAACAAATCTAGTTGTGACATTGTACAC CAGTTGCTCGAAAGGAGTGCAGAGGAAATGCTGTCACTTGTCAGATTGGTTGAGATGCTCCTCTCCGGTTCCTCTCTTCCAAAACTTAACGATGAAGAGT CCGGACTTGATCAACCAGGGATCTTAAAGTTACAATCGGACGAGGACTCGTGGGTTCAGGTGATCGAGGCTCTGTTAGTTGGAAACGGAACATCATCGGA CACTGTTTATTGGCTTCTTGAACAGCTTCTTAAAGACAAGTTGCACCGATGGCTTTCGTCCAAGTACAATCGGTTTGATTATCAAGATGGTTGCTTGCTG TCCAAGAAAGAACAAGGTATAATACACATGGTTGCTGGACTGGGATTCGAATGGGCGTTGACCCCCATACTCAACCATGGTCTCAGTGTTGACTTCCGCG ACATTAACGGGTGGACAGCTCTTCATTGGGCTGCACGCTTCGGGAGGGAGAAAATGGTTGCAGCCCTTATAGCTTCCGGAGCGTCACCCCGAGCGGTCAC AGATCCCAGTTCACAAGATCCGGCCGGGAAAACCCCAGCTTCTATAGCTGCCATCAATGGACATCACGGACTAGCAGGTTATCTTTCCGAGCTCGCACTG ACCACCCATCTCTCGTCTCTTACATTAGAAGAGAGCGAGCTATCCAAAGGATCTGCAGAGGTTGAAGCTGAGAGAACCGTCGTCGACAGCATCTCGAATG TGAACTTCCCTGCATCATTCGAAGATCAGGTCTCGATTAACACCACACTCGCTGCCGTCAGGAATTCGGCTCAGGCAGCTGCCAGGATACAATCGGCTTT CCGTGCACATTCTTTCAGAAAGCGGCAGCAAAGAGAGACTGCCGTTAGAGACGAGTATGGGATCCCATCCAGTGAGATTCAGGAGCTTTCAGCTCTCTCG AAAATGGCCTTCGGTAATGCTCGAGACTACGGCACTGCTGCTCTATCGATCCAGAAGAAATATCGCGGATGGAAAAATCGACAGGATTTCCTTACTTTGA AGAAGAAAGTTGTCAAGATTCAGGCTCATGTGAGAGGTTACCAGGTGAGAAAGCATTATCGGGTGATTTGCTGGGCTGTCGGGATCATAGACAAGGTGGT GCTACGATGGAGACGAAAAGGCGCCGGTCTGCGAAACTTCCGGAACAAGGCTGAGCAGCCAATTGTCGAGGACGAGGAATCAGACGAAGACATCCTCAAG GTGTTCCGTAAGCAGAAGGTGGACGGAGCCATTGACGAAGCAGTTTCGCGCGTTCTGTCGATGGTTCATTCTCCAGACGCTCGCGATCAGTACCAGAGAA TGCTGGAGCGGTACAAGCAAGCTAAGGCGGAACTGGCTACGACGAGCGAAGCAGGAACCTTGGATCAACCCGACAACACCAACAATGAGTTCGAAATGGA CGACGAAGACCTTCAGCAATATTTCCAGTAG
AA sequence Show only first row Show all	>Lus10011352 pacid=23159189 polypeptide=Lus10011352 locus=Lus10011352.g ID=Lus10011352.BGIv1.0 annot-version=v1.0 MMRRQQQQQDQHSRAFHELTNMVFNLLRSPPTPIQFSDHFPAAVSSSPPPRSLRSAKITPAGFASLLLGVSLAMMLCGSVTFFIGFILMPWVLGLVMVFY VAGIVSMIAMLGRSLLCFAAGPPPPPRKDIPVFLWIIRFQLSNENLGVLIGERLTESKTLYLSSRILEMTRIVSRLFPIIVNQPGPDQGYDINQLLQEAQ HRWLKPVEVFFILQNHEKYKFTEKTPIRPSAGSLFLYNKRVTRFFRKDDHNWRKKKDGRTVAEAHEKLKVGNVERLNCYYAHGEEIPHFQRRSYWMLEPP YDHVVLVHYRDINEGITPSGSLVQSTPGASSHLGPSPSYNTTPNQGSTQPISNSYEPYTNSSSPGSTEVTSEILIKGNEGFSTTKFAAEKNDVNQYLRSL KKNLSLDDDMVTGLDLFDEGPLNHGYDDAFEQEKMTSALKTEPVEEFQHSQWLNFDQINYGAAAAVSGPGVGKSEVRDVNLDSYGMPFSHGQADSRLAIA QHNKFTIRKISPEWGYCNEITKVLIVGFFLCDPSESAWTCMFGDKEVPLEIIQEGVLQCATPLEMPPGKVSICITSGNRQPCSEIGQFEFRNKSSCDIVH QLLERSAEEMLSLVRLVEMLLSGSSLPKLNDEESGLDQPGILKLQSDEDSWVQVIEALLVGNGTSSDTVYWLLEQLLKDKLHRWLSSKYNRFDYQDGCLL SKKEQGIIHMVAGLGFEWALTPILNHGLSVDFRDINGWTALHWAARFGREKMVAALIASGASPRAVTDPSSQDPAGKTPASIAAINGHHGLAGYLSELAL TTHLSSLTLEESELSKGSAEVEAERTVVDSISNVNFPASFEDQVSINTTLAAVRNSAQAAARIQSAFRAHSFRKRQQRETAVRDEYGIPSSEIQELSALS KMAFGNARDYGTAALSIQKKYRGWKNRQDFLTLKKKVVKIQAHVRGYQVRKHYRVICWAVGIIDKVVLRWRRKGAGLRNFRNKAEQPIVEDEESDEDILK VFRKQKVDGAIDEAVSRVLSMVHSPDARDQYQRMLERYKQAKAELATTSEAGTLDQPDNTNNEFEMDDEDLQQYFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	0	1
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	2.0	0.8645
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	2.0	0.9131
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	6.1	0.8142
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10015231 [exp]	7.7	0.8618
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10025092 [exp]	9.5	0.8647
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	9.5	0.8688
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	11.0	0.8502
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	11.2	0.8504
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	11.2	0.8634
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	12.2	0.8504

Compare expression of checked genes

Lus10011352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.