Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48660 122 / 1e-38 Protein of unknown function (DUF 3339) (.1) AT5G63500 117 / 1e-36 Protein of unknown function (DUF 3339) (.1) AT5G08391 99 / 3e-29 Protein of unknown function (DUF 3339) (.1) AT3G27027 96 / 3e-28 Protein of unknown function (DUF 3339) (.1) AT3G27030 95 / 9e-27 unknown protein AT5G40980 89 / 2e-25 Protein of unknown function (DUF 3339) (.1) AT3G01950 87 / 2e-24 Protein of unknown function (DUF 3339) (.1) AT5G14110 85 / 7e-24 Protein of unknown function (DUF 3339) (.1) AT5G40970 78 / 4e-21 Protein of unknown function (DUF 3339) (.1) AT3G01940 71 / 5e-18 Protein of unknown function (DUF 3339) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003120 [exp] 134 / 4e-43 AT3G48660 121 / 5e-38 Protein of unknown function (DUF 3339) (.1) Lus10015769 [exp] 115 / 9e-36 AT3G48660 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10037036 [exp] 114 / 2e-35 AT3G48660 112 / 3e-34 Protein of unknown function (DUF 3339) (.1) Lus10015770 [exp] 106 / 3e-32 AT5G08391 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10037035 [exp] 104 / 1e-31 AT5G08391 111 / 2e-34 Protein of unknown function (DUF 3339) (.1) Lus10035201 [exp] 102 / 2e-30 AT5G08391 104 / 2e-31 Protein of unknown function (DUF 3339) (.1) Lus10032032 [exp] 102 / 2e-30 AT5G08391 104 / 2e-31 Protein of unknown function (DUF 3339) (.1) Lus10035198 [exp] 100 / 9e-30 AT3G48660 99 / 5e-29 Protein of unknown function (DUF 3339) (.1) Lus10032028 [exp] 100 / 9e-30 AT3G48660 99 / 5e-29 Protein of unknown function (DUF 3339) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G170400 [exp] 119 / 2e-37 AT3G48660 89 / 3e-25 Protein of unknown function (DUF 3339) (.1) Potri.015G098300 [exp] 111 / 4e-34 AT3G48660 107 / 3e-32 Protein of unknown function (DUF 3339) (.1) Potri.001G329000 [exp] 107 / 7e-33 AT5G08391 113 / 5e-35 Protein of unknown function (DUF 3339) (.1) Potri.003G170500 [exp] 106 / 2e-32 AT5G08391 112 / 9e-35 Protein of unknown function (DUF 3339) (.1) Potri.001G057900 [exp] 103 / 2e-31 AT5G08391 113 / 6e-35 Protein of unknown function (DUF 3339) (.1) Potri.001G328701 [exp] 103 / 3e-30 AT3G27027 115 / 7e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064301 [exp] 101 / 3e-30 AT5G08391 108 / 5e-33 Protein of unknown function (DUF 3339) (.1) Potri.001G058001 [exp] 101 / 3e-30 AT3G48660 74 / 9e-19 Protein of unknown function (DUF 3339) (.1) Potri.012G100100 [exp] 96 / 3e-28 AT5G63500 79 / 1e-21 Protein of unknown function (DUF 3339) (.1) Potri.017G065444 [exp] 92 / 9e-27 AT3G48660 67 / 2e-16 Protein of unknown function (DUF 3339) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11820 [flax] [poplar] DUF3339 Protein of unknown function (DUF3339)
Representative CDS sequence Show only first row Show all	>Lus10011353 pacid=23159262 polypeptide=Lus10011353 locus=Lus10011353.g ID=Lus10011353.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGGGGCCGGTGGTGATAGCGACGGTGCTGTTCGTGCTGCTGACTCCGGGGTTACTGTTCCAGATCCCGGCGAGGGGCAGAGTGGTGGAGT TTGGGAATATGCAGACGAGTGGGGCGTCGATATTGGTCCACACAGTCATCTACTTTGGGCTCATCACCATCTTCCTCATCGCCATCGGAGTCCACATCTA CGCCGGATAG
AA sequence Show only first row Show all	>Lus10011353 pacid=23159262 polypeptide=Lus10011353 locus=Lus10011353.g ID=Lus10011353.BGIv1.0 annot-version=v1.0 MADWGPVVIATVLFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTVIYFGLITIFLIAIGVHIYAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48660			Protein of unknown function (D...		Lus10011353 [exp]	0	1
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	2.2	0.8621
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10021994 [exp]	4.2	0.8379
AT1G16560			Per1-like family protein (.1.2...		Lus10031187 [exp]	7.5	0.7920
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	8.2	0.8045
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	14.5	0.8035
AT1G61620			phosphoinositide binding (.1)		Lus10002584 [exp]	20.2	0.8037
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	23.5	0.7912
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	25.0	0.7815
AT4G32930			unknown protein		Lus10005503 [exp]	25.6	0.8098
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	33.0	0.7982

Compare expression of checked genes

Lus10011353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.