Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27340 187 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015775 [exp] 225 / 5e-71 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 222 / 1e-69 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003117 [exp] 161 / 6e-50 AT1G27340 165 / 7e-50 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057100 [exp] 204 / 5e-63 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 202 / 3e-62 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011354 pacid=23159273 polypeptide=Lus10011354 locus=Lus10011354.g ID=Lus10011354.BGIv1.0 annot-version=v1.0 ATGGTACCCTCCTCCTCCGAGACTATCTCTATCTCTTCCCGTCGAGACAATTGTCTTGCCGGTTGCTTCGCAGGAGGTCCAGTCTGTTTCCTCGACATCA GCGAGCAGAATTTCCACGTCTGCAATCCGTTGACCGGATCCTCTCGAGAGATCCCCGCAATATCAAAGCCAGTCGAGGCATTGTTCCGCGGTGCTGTTGG GATGGTAGCTTTCGACTGGGTGAAAGACTTGTGGATTCGTCGCTGTCCCGGTAGTAACATGCCTTCGTACATCAAGCTGCCATTATCATTCAACTTCAGC TCGCCAGCAATCTCGGTCGATAACACACTCTACATCATGGTTTCGGATCCTGATGGGATCGTATCATATGATACGGTTACGGGGACATGGAAGCAACTCG CAATCCCAGCTCTGCACCTTTTGTGTGAGTGTGTGCTTGCCGAATGCAAGGGGCGGATCATGCTTGTGGGACTGCTAGCGAAAAAATGCAGCATCGTGTG TCGCCGTATGGGAACTGCAGAGATCGACGCTATTGTGGAAGGAGGTGGACAGAATGCCGAACCTATGGTGCTTTACGATAAGAGAGTTCGAATGACTTGC TTAGGCAACAAAGATCTGCTCATGCTGTCTTTGAGCGTGAGTGATATAAACCGGTTAGTGACTTACGATCTGGAGAATCGAGAATGGCACAAGGTTCCTG GATGCTCAGTGGCTTGCCGGAGATCGAGACTACAGTGGATCGTTAGTGGCTCGCCATTTCACCCTTCCCCTACTGCCATGGCCTGA
AA sequence Show only first row Show all	>Lus10011354 pacid=23159273 polypeptide=Lus10011354 locus=Lus10011354.g ID=Lus10011354.BGIv1.0 annot-version=v1.0 MVPSSSETISISSRRDNCLAGCFAGGPVCFLDISEQNFHVCNPLTGSSREIPAISKPVEALFRGAVGMVAFDWVKDLWIRRCPGSNMPSYIKLPLSFNFS SPAISVDNTLYIMVSDPDGIVSYDTVTGTWKQLAIPALHLLCECVLAECKGRIMLVGLLAKKCSIVCRRMGTAEIDAIVEGGGQNAEPMVLYDKRVRMTC LGNKDLLMLSLSVSDINRLVTYDLENREWHKVPGCSVACRRSRLQWIVSGSPFHPSPTAMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27340			Galactose oxidase/kelch repeat...		Lus10011354 [exp]	0	1
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	5.7	0.8945
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	6.9	0.9166
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10004026 [exp]	7.7	0.9179
AT2G14255			Ankyrin repeat family protein ...		Lus10040833 [exp]	8.0	0.9109
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	10.2	0.9150
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	11.2	0.9063
					Lus10039025 [exp]	13.7	0.8995
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	18.5	0.8837
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	21.0	0.8998
AT1G59600		ZCW7	ZCW7 (.1)		Lus10018676 [exp]	21.6	0.8939

Compare expression of checked genes

Lus10011354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.