Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43270 181 / 5e-53 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G27360 162 / 6e-46 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G27370 159 / 9e-45 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT2G42200 124 / 5e-32 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G02065 122 / 1e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 123 / 3e-31 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G57920 120 / 1e-30 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT2G33810 110 / 3e-29 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT2G47070 118 / 1e-28 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G53160 109 / 2e-28 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006411 [exp] 619 / 0 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021614 [exp] 164 / 2e-46 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 130 / 5e-34 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 124 / 4e-32 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10003126 [exp] 123 / 6e-32 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10011348 [exp] 120 / 4e-31 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10016275 [exp] 120 / 5e-31 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10021141 [exp] 121 / 5e-30 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10036812 [exp] 119 / 8e-30 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172600 [exp] 239 / 4e-74 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G055900 [exp] 228 / 2e-70 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.018G149900 [exp] 179 / 1e-51 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.016G048500 [exp] 131 / 2e-34 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.002G142400 [exp] 131 / 2e-34 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.002G142200 [exp] 127 / 2e-33 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.008G097900 [exp] 130 / 3e-33 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.001G058600 [exp] 126 / 9e-33 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.014G057700 [exp] 124 / 4e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.003G169400 [exp] 123 / 5e-32 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10011356 pacid=23159237 polypeptide=Lus10011356 locus=Lus10011356.g ID=Lus10011356.BGIv1.0 annot-version=v1.0 ATGGAGTGGAATCCGAAGCCAAACTTGCAATGGGACTGGGAGAATTTGATAATGTACAATGACAACAGTAACCCCAGAAAGCTAGACGATGATGAAGAAG AAGAAGAAGGAGCTGATTGGGAAATTGCAGAGGAAAAAGGAACTCCAGTAATCCATGCTGGTTCATTCTCATCGAAGTCAGCTTCCACCACTTCATCACA AACACAAACACCACCGAAAATGACGGGGTATTCCTCCGAGCCTTTGCTTGGTTTGAAGCTCGGGAAGAGGACCTACTTCGAGGACTCGAGCTGCGTGAGC AACTCTATTAAGGTGGCATCAGGAACATCAGTTCCTGTGAATGCTGCTGCTGCTAGTACGACGATGAAACGGTCGAGGTCGAGTTCGAGTGGAGTTCCGG TTTATTGCCAGGTGGAAGGGTGTAACCTCGATCTTTCGGGGGCGAAGGATTACCATCGGAAGCATCGAGTTTGCGAGGGCCACTCGAAGTGCCCCAAGGT TGTTGTTGCCGGACTCGAGCGTAGGTTCTGCCAGCAATGTAGCAGGTTCCACAGCCTGTTCGAGTTTGACGAGAAGAAGAGAAGCTGCCGGAAGAGGCTC TCGGATCACAATGCAAGGCGTCGCAAGCCGCAGGGCGAATCACTACGCTTCAACCCTTCAAGATTGCATTCATCTATATACGATGAGAGGCAGAGAATGA ACTACGGGTGGGACACAAGGAGTCCACTCATCCACGGAAGGCCCGGAAACCATCTGTTCTGGGATGACTCGTCGGGGTCCAAGTTCACAATAACAAAGGA GTGTCCTTCCAATATCCCGATTCATCATCATCTCCTCGGAAACCAGCCGGCTTGCACTCAAGGAGTGGAGGTGGTACATTCAACCGTGTCACTGAACCCG GGTGGTGATGATGGTACCCAGGATCTCCAACGTGCTCTCTCTCTTCTGTCAACGAATTCGTCATCGTGGGGCTCATGCGAGCAGCCATCGACGATAACTT CACTCGATACTGTCCATGCAACCTCTACCGGGTTTCCTCAACCTCTGTCCGGAATGCCACTGCAATCGGTTGACGCTCAGATGCGTTCCTTCACACCATC ACAGGCTGACAACTCTCAGCATCATCAGCAGATGCTGAAAGGGCCACAGTATTCGGCCGAGTTCTACCATTGTCAGTTGTAG
AA sequence Show only first row Show all	>Lus10011356 pacid=23159237 polypeptide=Lus10011356 locus=Lus10011356.g ID=Lus10011356.BGIv1.0 annot-version=v1.0 MEWNPKPNLQWDWENLIMYNDNSNPRKLDDDEEEEEGADWEIAEEKGTPVIHAGSFSSKSASTTSSQTQTPPKMTGYSSEPLLGLKLGKRTYFEDSSCVS NSIKVASGTSVPVNAAAASTTMKRSRSSSSGVPVYCQVEGCNLDLSGAKDYHRKHRVCEGHSKCPKVVVAGLERRFCQQCSRFHSLFEFDEKKRSCRKRL SDHNARRRKPQGESLRFNPSRLHSSIYDERQRMNYGWDTRSPLIHGRPGNHLFWDDSSGSKFTITKECPSNIPIHHHLLGNQPACTQGVEVVHSTVSLNP GGDDGTQDLQRALSLLSTNSSSWGSCEQPSTITSLDTVHATSTGFPQPLSGMPLQSVDAQMRSFTPSQADNSQHHQQMLKGPQYSAEFYHCQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10011356 [exp]	0	1
AT4G13150			unknown protein		Lus10038175 [exp]	3.5	0.8483
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	4.5	0.8468
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	10.5	0.8278
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	13.5	0.8379
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	14.3	0.8104
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10023523 [exp]	15.5	0.8128
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	16.6	0.8264
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	22.2	0.8111
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	22.9	0.8191
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	23.4	0.8093

Compare expression of checked genes

Lus10011356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.