Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67325 350 / 3e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT2G17975 50 / 2e-06 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006412 [exp] 498 / 7e-176 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10037029 [exp] 343 / 3e-115 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015776 [exp] 245 / 4e-78 AT1G67325 192 / 8e-61 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10019433 [exp] 46 / 3e-05 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 45 / 5e-05 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10030555 [exp] 43 / 0.0006 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172500 [exp] 436 / 2e-151 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.001G056000 [exp] 400 / 4e-138 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.005G115100 [exp] 48 / 1e-05 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 44 / 0.0003 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 43 / 0.0007 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10011357 pacid=23159230 polypeptide=Lus10011357 locus=Lus10011357.g ID=Lus10011357.BGIv1.0 annot-version=v1.0 ATGGCTACATTGTTTGACTACGGCAATGTTGTCCAAGCCCATAGTTCAGTACCCAAAACAGCTGGCCCGGCGCGAACAGAACTAACGAACAGATTATCGC TGGTTTTCCCTCCGCCGGCCGTACACTCAAGCTCCGGGAAGCGACGAAGATCCTTCTTGTTCCCAGCTCTTTCTTCTCATCCGATCATTCCGGCTCAATG TCTCAGGTATCTCTCTCCATATTTGTATCCGTTATCGTCGATTGGGTCTCCTCAGTTTGATTGCCAAAGATTTCTTCAACGATATGTTGTGGATAATCGA AATTCCTCAGCTACCAAGCGTGCTAGAACTGATGGCAGTCGTAGAGAAGACGATTGGACCTGCCCAAGCTGTGGCAATGTTAACTTCTCGTTCCGGACAA CTTGCAATATGCGTAACTGCACCCAACCTAGGCCAGCTGATCACAACTCGAAGTTTGCTGCCAAGCCTTTGCATCAGCTTCACAATTACTCCTCCCCAGC TCCCTATGTAGGCTCTGGTGCACCATCGTCCATGTATATGGGTGTGCCCCCTTATGGGTCTTCCATGTTCAATGCAGCTTCTCTTCCTCCATACGAGGCA CCGTTTTCGGGAGGTTCTGCATATCCCTACAATTACAGTAGCCGAATCTCGACAGGCAGCCCTTATAATAGGCCGCCACTCCATATGTCTACTCCACCTT ATTCCCGTGGATCTATGATGGGAAATGGCGGTTTGTATGGAATGCCCCCCATGATGGACCGTTATGGGATGGGCATGCCAATGGCCGCTGCTAATATGGG AGCAAGGCCGAGTTTTTACCCAGATGACAATGCTCAGAAGAATGATTCCGCCCGTGATAATGACTGGAACTGTCCGAAATGTGGGAACGTTAACTTCTCA TTCAGAACTTTTTGTAATATGCGCAAGTGCAATACTCCAAATCCGGGATCCCAGGCTGCCATGACTGACAAAAGTTCAAAAAAAAACACACCGGAAGGAA GTTGGAAGTGTGAAAAGTGCAACAACATAAATTATCCATTCCGAACTAAGTGTAATAGGCCGAATTGTGGAGCTGAGAAACCATCCCAGGCAACAAATTC CGCTTCACCTGCTGCTGAAGAGAACGAGCAGGTCTGTTTCGGGATTAAAATTGCTTTGAGTACTAGGACATGTATGAGGGTGTCAAGGTGGGGTCCAACA GTTGTCGTCCAGGGTCACTCATATTGGTGTCTTGAAAGTCAGTCTTGTCGTGGTCGTCATGGTGCACAAGTTGTTGGGTCACTCTACCTTCAAGTCTGTC GAGGTGTTGTATCAGTTCCTGTGAAAGCAGAATCTTCAGTTCCCAAAGGTTCCTTAGGTCTGTCGTTAAATTCGGTTGTTCCAACGTGGCATTGGTCTTG TGGGATTTTTCAGTCTGTTCCTATTGCTGGTTGCTACTTGCTAGTCTGCAGATGTCCAGTTTGTGTAGTTTATCTTCTGCATGCCTCGTCGAAGATTGTA TGCATCCCATTGTCAGGGGAAAGGTCGATTCCCGGGGATGACAATGCCTCTTTCTGA
AA sequence Show only first row Show all	>Lus10011357 pacid=23159230 polypeptide=Lus10011357 locus=Lus10011357.g ID=Lus10011357.BGIv1.0 annot-version=v1.0 MATLFDYGNVVQAHSSVPKTAGPARTELTNRLSLVFPPPAVHSSSGKRRRSFLFPALSSHPIIPAQCLRYLSPYLYPLSSIGSPQFDCQRFLQRYVVDNR NSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKFAAKPLHQLHNYSSPAPYVGSGAPSSMYMGVPPYGSSMFNAASLPPYEA PFSGGSAYPYNYSSRISTGSPYNRPPLHMSTPPYSRGSMMGNGGLYGMPPMMDRYGMGMPMAAANMGARPSFYPDDNAQKNDSARDNDWNCPKCGNVNFS FRTFCNMRKCNTPNPGSQAAMTDKSSKKNTPEGSWKCEKCNNINYPFRTKCNRPNCGAEKPSQATNSASPAAEENEQVCFGIKIALSTRTCMRVSRWGPT VVVQGHSYWCLESQSCRGRHGAQVVGSLYLQVCRGVVSVPVKAESSVPKGSLGLSLNSVVPTWHWSCGIFQSVPIAGCYLLVCRCPVCVVYLLHASSKIV CIPLSGERSIPGDDNASF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	0	1
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	8.2	0.7607
AT2G27410	B3		Domain of unknown function (DU...		Lus10035393 [exp]	9.8	0.6959
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	11.9	0.7592
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10005584 [exp]	12.2	0.7330
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	14.7	0.7187
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	16.2	0.7450
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10026874 [exp]	18.9	0.7100
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	28.0	0.6779
AT1G09050			unknown protein		Lus10004495 [exp]	30.0	0.7068
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10002938 [exp]	30.9	0.6630

Compare expression of checked genes

Lus10011357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.