Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67330 345 / 1e-119 Protein of unknown function (DUF579) (.1) AT1G27930 322 / 1e-110 Protein of unknown function (DUF579) (.1) AT1G71690 236 / 9e-77 Protein of unknown function (DUF579) (.1) AT1G09610 229 / 2e-74 Protein of unknown function (DUF579) (.1) AT1G33800 224 / 3e-72 Protein of unknown function (DUF579) (.1) AT4G09990 224 / 5e-72 Protein of unknown function (DUF579) (.1) AT2G15440 163 / 6e-48 Protein of unknown function (DUF579) (.1) AT5G67210 150 / 3e-43 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT3G50220 147 / 7e-42 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT4G24910 138 / 1e-38 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006415 [exp] 505 / 0 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 430 / 2e-153 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 428 / 1e-152 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 305 / 4e-104 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 228 / 1e-73 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10005829 [exp] 228 / 1e-73 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 221 / 7e-71 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 158 / 2e-46 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 156 / 1e-45 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056300 [exp] 372 / 2e-130 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 367 / 2e-128 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 229 / 3e-74 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 228 / 8e-74 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 227 / 2e-73 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 223 / 1e-71 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 179 / 3e-54 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.015G096900 [exp] 171 / 4e-51 AT4G24910 248 / 6e-81 Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 170 / 6e-51 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 163 / 3e-48 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10011360 pacid=23159202 polypeptide=Lus10011360 locus=Lus10011360.g ID=Lus10011360.BGIv1.0 annot-version=v1.0 ATGGCCGCGCTCGTCTTCGCCGGCGTACTCATCAGCAGCTTCATCCGCTCAACCGACACCTCCTCCTTCCTCTGCTCCCTTGCCGGCGGGGGAAGCACCC CCCCCCCCCCCCACAAATCCCTCCCCCCCTCCTCCCNNGGTGGAACCACCGCCGCCGCCGCCAATAAATCCCTCTCCTCCTCCTCTTCCTCCGACTCCAT AGCAGCACAGCTCAACGCAATCGTCCACTACGCAACCTCACGAATCACACCGCAGCAGAACATCCACGAGATCTCAATCACGCTGAAGGTCCTCCTCGAC AAGTCCCCCTGCAACTTCCTCGTCTTCGGCCTCGGATTCGATTCCCTTATGTGGAACTCGCTCAACCCGGGCGGAACGACCATCTTCCTCGAGGAGGATC CGTCGTGGGTGAAATCGGTGCTGAAGGACGCGCCGTCGCTCCACGCACACACTGTCAAGTACAGGACGCAGCTCAAGGAGTCAGATCGGCTCCTGAAATC TTACCGTAAGGAACCACTCTGCTCCCCCGGGCAAGCCTATTTAAAAGGGAATATGAAATGCCCTCTTGCTTTAGCTACTTTACCGGAGGAGATCTACGAG AAAGAATGGGATCTGATCATGATCGACGCGCCGAGAGGGTATTTCCCAGAGGCGCCGGGGAGGATGGCGGCGATCTTCTCGGCGGCGGTTATGGCCAGGG CGAGGAAAGGGTCCGGGGTGACGCATGTGTTTCTTCATGATGTTGATCGGAAGGTGGAGAAGAGGTATGCGGAGGAGTTTCTGTGTAGGAAGTATTTGGT TAAGGGAGTTGGCCGGTTGTGGCATTTCGAGATCCCGGCGGCGGCGAATATGACCGGCGAAGATGAGACGGCGTGGTTCTGTTAG
AA sequence Show only first row Show all	>Lus10011360 pacid=23159202 polypeptide=Lus10011360 locus=Lus10011360.g ID=Lus10011360.BGIv1.0 annot-version=v1.0 MAALVFAGVLISSFIRSTDTSSFLCSLAGGGSTPPPPHKSLPPSSXGGTTAAAANKSLSSSSSSDSIAAQLNAIVHYATSRITPQQNIHEISITLKVLLD KSPCNFLVFGLGFDSLMWNSLNPGGTTIFLEEDPSWVKSVLKDAPSLHAHTVKYRTQLKESDRLLKSYRKEPLCSPGQAYLKGNMKCPLALATLPEEIYE KEWDLIMIDAPRGYFPEAPGRMAAIFSAAVMARARKGSGVTHVFLHDVDRKVEKRYAEEFLCRKYLVKGVGRLWHFEIPAAANMTGEDETAWFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67330			Protein of unknown function (D...		Lus10011360 [exp]	0	1
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	1.0	0.9266
AT3G28720			unknown protein		Lus10033020 [exp]	4.0	0.9030
AT5G67020			unknown protein		Lus10019345 [exp]	4.9	0.9086
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10040447 [exp]	6.9	0.8656
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	7.5	0.9064
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	7.7	0.9006
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	9.5	0.9024
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	9.8	0.8949
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	11.0	0.8600
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	12.6	0.8683

Compare expression of checked genes

Lus10011360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.