Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61470 414 / 5e-148 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT1G19150 297 / 2e-101 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT3G47470 222 / 3e-72 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT5G28450 204 / 2e-66 Chlorophyll A-B binding family protein (.1) AT1G45474 199 / 2e-63 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT1G61520 169 / 3e-51 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3) AT3G54890 144 / 4e-42 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT1G29930 132 / 6e-37 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT1G29920 132 / 6e-37 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 132 / 6e-37 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006416 [exp] 536 / 0 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10039912 [exp] 290 / 7e-99 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10021663 [exp] 231 / 1e-75 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10001644 [exp] 229 / 7e-75 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10021730 [exp] 206 / 6e-66 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10042657 [exp] 204 / 3e-65 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10027649 [exp] 177 / 2e-55 AT1G19150 219 / 4e-72 photosystem I light harvesting complex gene 6 (.1) Lus10012297 [exp] 166 / 3e-50 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10016074 [exp] 166 / 3e-50 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056700 [exp] 442 / 5e-159 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.003G171500 [exp] 440 / 5e-158 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.006G139600 [exp] 318 / 8e-110 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.015G062200 [exp] 229 / 5e-75 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.014G029700 [exp] 192 / 2e-60 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.014G172400 [exp] 166 / 4e-50 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3) Potri.008G041000 [exp] 141 / 6e-41 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 137 / 2e-39 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.011G079500 [exp] 132 / 4e-37 AT2G34430 480 / 6e-174 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.002G189300 [exp] 131 / 8e-37 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10011361 pacid=23159207 polypeptide=Lus10011361 locus=Lus10011361.g ID=Lus10011361.BGIv1.0 annot-version=v1.0 ATGGCTTCTGTTTGTGCTTCCTCCGCCATTACCGCAGTCTCTTCTCCAAGGCAAGTCTCACAGAAGAATGGATCGCCGGCGGGGTTCCTGAGCGGGAAGA GATTGACGGGTGTGAACAGGTTTTCATCGCCGGCGATCAGTGGTCGTCGACGGGGAGGTCTGACGGCGGTTTGTGCAGTGGCTGACCCAGAGAGGCCGAT TTGGTTCCCTGGGAGCACTCCTCCAGTTTGGCTCGACGGCACCCTCCCCGGAGACTTTGGCTTCGATCCACTTGGCCTAGGATCCGACCCGGAAACCCTG AGATGGAACGTACAAGCCGAGCTAGTCCACTGCCGGTGGGCAATGCTGGGAGCTGCCGGGATATTCATCCCGGAGTTCCTCACCAAGATCGGAATCCTCA ACACTCCGTCGTGGTACACCGCCGGCGAGCAGGAATACTTCACCGACACAACCACCTTGTTCATTGTCGAGCTCATCTTCATCGGCTGGGCCGAAGGCAG GAGATGGGCCGACATCTTGAAGCCCGGTTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTGACCGGAACCGACGTTGGCTACCCGGGTGGGTTG TGGTTTGACCCGCTCGGGTGGGGAAGCGGTTCACCCGAGAAGCTCAAGGAGCTGAGGACCAAGGAGATCAAGAACGGCAGGTTGGCTATGTTGGCTGTTA TGGGTGCTTGGTTCCAACATATATACACCGGGACCGGTCCCATCGATAACCTCTTCGCTCACCTTGCCGATCCTGGTCACGCCACTATTTTTGCTGCATT CACACCCAAGTGA
AA sequence Show only first row Show all	>Lus10011361 pacid=23159207 polypeptide=Lus10011361 locus=Lus10011361.g ID=Lus10011361.BGIv1.0 annot-version=v1.0 MASVCASSAITAVSSPRQVSQKNGSPAGFLSGKRLTGVNRFSSPAISGRRRGGLTAVCAVADPERPIWFPGSTPPVWLDGTLPGDFGFDPLGLGSDPETL RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL WFDPLGWGSGSPEKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10011361 [exp]	0	1
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	1.4	0.9826
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	1.4	0.9817
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10012297 [exp]	3.0	0.9783
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017476 [exp]	3.2	0.9742
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	3.5	0.9745
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10001644 [exp]	3.5	0.9662
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	4.0	0.9324
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10021663 [exp]	5.3	0.9591
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10027871 [exp]	7.1	0.9218
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10042219 [exp]	8.7	0.9313

Compare expression of checked genes

Lus10011361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.