Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 268 / 5e-88 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 240 / 8e-78 HCP-like superfamily protein with MYND-type zinc finger (.1) AT2G24640 45 / 6e-05 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G65450 44 / 8e-05 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 44 / 8e-05 UBP16 ubiquitin-specific protease 16 (.1) AT1G17110 44 / 0.0002 UBP15 ubiquitin-specific protease 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006418 [exp] 397 / 2e-138 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037021 [exp] 315 / 1e-106 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10015784 [exp] 307 / 4e-103 AT1G67340 474 / 5e-168 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10022147 [exp] 40 / 0.0003 AT1G67623 78 / 5e-18 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056800 [exp] 301 / 1e-100 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 293 / 2e-97 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.015G096200 [exp] 253 / 2e-82 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 249 / 5e-81 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.002G104800 [exp] 43 / 0.0003 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.006G270600 [exp] 42 / 0.0003 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.005G156900 [exp] 42 / 0.0006 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10011362 pacid=23159233 polypeptide=Lus10011362 locus=Lus10011362.g ID=Lus10011362.BGIv1.0 annot-version=v1.0 ATGAAGACGAGGGGAGGCAGTTGTTACCGGAGAATGGACGTTTGTGTGGAGAAGAGAGTTCGGAAAATCGATTTCGCCGGTGAGATTCTCTCCGGGAAGC GGCGGAGGATCTCGCCGGAGCTGAAATCCGGAGGCGGAGGGGAGTTTGATATGTTCGATTCTCTTCCGGATGATCTTGTGCTGTCGATTCTCGCCAAGAT TAGCTCCTCTGCTTCTTCTCCATCGGATTTCTTCAACGTATTGATAACATGTAAGAGATTCAACGGGTTAGGACTTAATCCGGTGGTGGTATCAAAGGCT TCTCAGAAAACGTTCGCAATCAAGGCGAAGAACTGGTCGGAATCCGGTCACCGGTTTCTGAAGCTCTGCGCCGACGCCGGCAATGTTGAAGCTTGCTATA CTCTCGGCATGATTCGGTTTTACTGTCTGCAAAATCGAGGCAGCGGAGCTTCGTTGATGGCGAAGGCGGCGATTAGCTCACACGCACCTTCACTGTACTC GCTAGCTGTGATTCAGTTCAACGGCAGCGGCGGAACGAAGAGCGATAAGGACCTCCGCGCCGGAGTGGCACTGTGTGCACGCGCCGCCTTCCTCGGTCAC ATCGACGCCTTGAGGGAGCTAGGCCACTGCCTCCAGGACGGGTACGGCGTCCGCCAGAACATCGCCGAGGGACGGCGGTTCCGATTTCGGGGGCTCAGGC TGTGTTCTCACTTTGGATGCGGGCGGCCGGAGACACGTAAGCACGAGTTCCGGCGGTGCTCTGTTTGCGGGACGGTGAACTACTGCTCAAGAGCTTGCCA GGCTTTGGATTGGAAGCTGGGGCATAAGGCGGAGTGCACTCCGGCGGAGAGGTGGGTTGAGGAAGACGGCGAGGGGATGGACATCGACGGCGTCGGTGAC GGTAATGATAACGGAGTGGTGGATAGCTAG
AA sequence Show only first row Show all	>Lus10011362 pacid=23159233 polypeptide=Lus10011362 locus=Lus10011362.g ID=Lus10011362.BGIv1.0 annot-version=v1.0 MKTRGGSCYRRMDVCVEKRVRKIDFAGEILSGKRRRISPELKSGGGGEFDMFDSLPDDLVLSILAKISSSASSPSDFFNVLITCKRFNGLGLNPVVVSKA SQKTFAIKAKNWSESGHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAPSLYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGH IDALRELGHCLQDGYGVRQNIAEGRRFRFRGLRLCSHFGCGRPETRKHEFRRCSVCGTVNYCSRACQALDWKLGHKAECTPAERWVEEDGEGMDIDGVGD GNDNGVVDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	0	1
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	3.5	0.7437
AT1G47790			F-box and associated interacti...		Lus10026616 [exp]	5.1	0.6867
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	6.2	0.7533
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	7.0	0.8081
AT1G64700			unknown protein		Lus10001663 [exp]	7.5	0.8055
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	13.8	0.7037
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	15.0	0.7081
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	22.7	0.7458
AT3G22970			Protein of unknown function (D...		Lus10039397 [exp]	28.3	0.7291
AT1G34420			leucine-rich repeat transmembr...		Lus10006067 [exp]	29.3	0.7341

Compare expression of checked genes

Lus10011362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.