Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27080 151 / 4e-46 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT5G40930 144 / 9e-44 TOM20-4 translocase of outer membrane 20-4 (.1) AT1G27390 143 / 5e-43 TOM20-2 translocase outer membrane 20-2 (.1) AT3G27070 114 / 5e-32 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006419 [exp] 316 / 3e-111 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10012532 [exp] 151 / 3e-42 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035211 [exp] 134 / 7e-39 AT3G27080 210 / 1e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10032045 [exp] 130 / 1e-37 AT3G27080 211 / 2e-69 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10041558 [exp] 68 / 3e-14 AT3G27080 83 / 5e-20 translocase of outer membrane 20 kDa subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330200 [exp] 167 / 1e-52 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1) Potri.001G054900 [exp] 164 / 2e-51 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.003G173400 [exp] 159 / 2e-49 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06552 [flax] [poplar] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Lus10011363 pacid=23159197 polypeptide=Lus10011363 locus=Lus10011363.g ID=Lus10011363.BGIv1.0 annot-version=v1.0 ATGGAGTTCACTCAAGAAGACTTCGATCGCCTCCTGTTCATGGAGCACGCCCGACAGACCGCCGAATCCAGCTACGCCAAGGACCCTAAAAACGCCGATA ACTTGACCAAGTGGGGAGCCGCGTTGCTTCAGCTGTCTCAATTGGAGAAAGGCCCTGCCGCAGTCACTCAGATGCTTGATGAGGCGGTGTTGAGATTCGA GGAGGCGTTGGGGATAAATCCACGCAAGCATGAAGCTTTGTGGGGGATGGGGAACGCGAACACGAATTATGCATTTTTATCTCCTGATCAAGCTGAAGCA GGACAACGATTTCATATGGCTGCTGAGTTTTATCAGCGAGCTCTCGACGAAGCTCCGGATAATCCGATATATCGCCAGTCTTTGATGGAGGTTGCTAAGG CGCCGGAGCTGCATCGACAGGCTTTTGAACAGATGGCTGCGGCTGCAACATCTAAGGGTTCGAAGAAGAAGAAGAGTAGGAAGACTGAGGATTTGATGTA TGACGTCTGTGGTTGGGTTATACTTGCCGCCGGAGTTGCCGCCATAGTGTCAATCTCAGTGTCAAAGTCCTATAATCACCCCCCGCCACCACCTCCGTCT TCACATTTCTAA
AA sequence Show only first row Show all	>Lus10011363 pacid=23159197 polypeptide=Lus10011363 locus=Lus10011363.g ID=Lus10011363.BGIv1.0 annot-version=v1.0 MEFTQEDFDRLLFMEHARQTAESSYAKDPKNADNLTKWGAALLQLSQLEKGPAAVTQMLDEAVLRFEEALGINPRKHEALWGMGNANTNYAFLSPDQAEA GQRFHMAAEFYQRALDEAPDNPIYRQSLMEVAKAPELHRQAFEQMAAAATSKGSKKKKSRKTEDLMYDVCGWVILAAGVAAIVSISVSKSYNHPPPPPPS SHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10011363 [exp]	0	1
AT4G17310			unknown protein		Lus10007477 [exp]	2.4	0.7415
AT1G15810			S15/NS1, RNA-binding protein (...		Lus10010090 [exp]	3.0	0.7058
AT2G42450			alpha/beta-Hydrolases superfam...		Lus10024878 [exp]	9.8	0.6912
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	13.1	0.6967
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	16.9	0.7220
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	24.2	0.6915
AT3G11640			unknown protein		Lus10000027 [exp]	42.7	0.6583
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	53.0	0.6556
					Lus10024691 [exp]	57.8	0.6535
AT4G15010			Mitochondrial substrate carrie...		Lus10001980 [exp]	70.6	0.6092

Compare expression of checked genes

Lus10011363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.