Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28490 455 / 4e-157 RmlC-like cupins superfamily protein (.1) AT2G18540 181 / 4e-50 RmlC-like cupins superfamily protein (.1) AT4G36700 159 / 3e-43 RmlC-like cupins superfamily protein (.1) AT3G22640 80 / 8e-16 PAP85 cupin family protein (.1) AT1G07750 53 / 2e-07 RmlC-like cupins superfamily protein (.1) AT2G28680 50 / 1e-06 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006420 [exp] 805 / 0 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 196 / 3e-55 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 192 / 9e-54 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10042617 [exp] 107 / 8e-25 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10042615 [exp] 96 / 5e-21 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10022070 [exp] 96 / 7e-21 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10005880 [exp] 77 / 4e-15 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10040867 [exp] 76 / 8e-15 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10022072 [exp] 67 / 2e-12 AT3G22640 114 / 4e-29 cupin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054700 [exp] 509 / 9e-179 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G029100 [exp] 182 / 3e-50 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.001G259208 [exp] 129 / 1e-34 AT2G28490 0 / 1 RmlC-like cupins superfamily protein (.1) Potri.006G002500 [exp] 99 / 2e-22 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212266 [exp] 74 / 2e-14 AT3G22640 128 / 2e-33 cupin family protein (.1) Potri.008G102900 [exp] 52 / 3e-07 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 51 / 7e-07 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.015G068200 [exp] 45 / 3e-05 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.001G308050 [exp] 46 / 4e-05 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G402600 [exp] 45 / 7e-05 AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10011364 pacid=23159213 polypeptide=Lus10011364 locus=Lus10011364.g ID=Lus10011364.BGIv1.0 annot-version=v1.0 ATGAGTTACCGAAACGGCGTCGTTCTGCTGGTGCTGCTGTACCTCACAGTAGTCATAATAGGGACGACCACAGGCGATGATGATGACCGGTTCCTACTCC AGTACTCGGAGCCGGTGATCCAGACCGAAGCAGGGGAAATGCGTGTCGTGATGAGGAACAACTTCGGTGGTGGCGGCGGAAGCGCACGTCGTCCGACAGC AATTGGTGGGAAGCCATTGCACATTGGGTTCCTTACGATGGAGCCGAAATCGCTGCTGGTCCCGCAGTATCTCGATTCGGGGCTGTTGATCTTCGTGCGG AGAGGGGAGGCGAAGATTGGGTTGATTTACGAAGACGAGCTGGCGGAGAGGCGGTTGAAGACTGGGGATGTGTATTGGATCCCGCCCGGTTCGGTTTTTT ACTTGGTTAATACTGGGGAAGGCCAGCGGCTGAATGTTATTTGTGCTATTGATCCCTCGGAGGGCCTAGGTTCGACCACTTTCCAGTCTTTCTTCATCGG AGGTGGCACTTATCCAACTTCAATCCTAGCCGGTTTCGATCCGGACACACTCGCAACTGCCTTCAATGTGACTATCGGGGAGCTTAGAGAGGTTATGTCC GCACAACGAGACGGCCCAATAGTCTTCATCGACGGCGGCTCTCTATCCCCTGACCGAAGAAGACAAAGAGCAAGATCGGTTTGGTCGGAGTTCCTCCAAC TCAAACACCATGATCGTCTTCGCCACCTCAAGCAAATGTTCGATTTCACAAACGAGGAGGAAGAAGCATCGTCATCATGGAGGAAAATCCTCCACTCATT CAGAAGAATGGCAGACTGGGGGGGAAGCAGCTCGAGAACGGGGAGATCGCCTGATTCGTACAATTTGTACGACAAAAAAGCCGATTTCAGCAATGCCTAC GGATGGAGCATAGCACTCGACGATGACGACTATTCGCCACTCAAGCAATCCGGAATCGGAGTGTTTCGAGTCAATCTAACCGCGGGGTCAATGATGGCGC CACATGTTAATCCGACCGCAACTGAATACGGAGTCGTTTTGAACGGTGCCGGGAGCGTGGAGATTGTGTACCCAAACGGGACGCAGGCGATCAAGGCGGA AATAGCGGAGGGCGATGTGTTCTTGGTGCCAAGGTATTTCCCGTTCAGCCAGATGGCGTCGAGGACTGGGCCCATGCAGTTCTTTGGGTTCACGACTTCG GCCCGTAAGAACAGGCCTCAGTTTTTGGTGGGGCGGAGCTCTGTGTTGGAGACCATGAAGGGTGCTGAGCTGGCGGCTGGGTTCGGAATGGCGGGTGATG AGCCGCGGTTTAGGGGGATCGTCGAGGCTCAACGGGAGTCGGTTATACTGCCGTCGGCGAGCGCATCACCGCCGTATGCCGCTGGGGAGGATTAG
AA sequence Show only first row Show all	>Lus10011364 pacid=23159213 polypeptide=Lus10011364 locus=Lus10011364.g ID=Lus10011364.BGIv1.0 annot-version=v1.0 MSYRNGVVLLVLLYLTVVIIGTTTGDDDDRFLLQYSEPVIQTEAGEMRVVMRNNFGGGGGSARRPTAIGGKPLHIGFLTMEPKSLLVPQYLDSGLLIFVR RGEAKIGLIYEDELAERRLKTGDVYWIPPGSVFYLVNTGEGQRLNVICAIDPSEGLGSTTFQSFFIGGGTYPTSILAGFDPDTLATAFNVTIGELREVMS AQRDGPIVFIDGGSLSPDRRRQRARSVWSEFLQLKHHDRLRHLKQMFDFTNEEEEASSSWRKILHSFRRMADWGGSSSRTGRSPDSYNLYDKKADFSNAY GWSIALDDDDYSPLKQSGIGVFRVNLTAGSMMAPHVNPTATEYGVVLNGAGSVEIVYPNGTQAIKAEIAEGDVFLVPRYFPFSQMASRTGPMQFFGFTTS ARKNRPQFLVGRSSVLETMKGAELAAGFGMAGDEPRFRGIVEAQRESVILPSASASPPYAAGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	1.0	0.9846
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	1.4	0.9786
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	3.5	0.9736
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	6.3	0.9729
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009960 [exp]	6.5	0.9645
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	6.9	0.9612
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10035955 [exp]	7.6	0.9378
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	7.7	0.9513
AT1G67040			unknown protein		Lus10017607 [exp]	8.5	0.9469
					Lus10006724 [exp]	8.7	0.9677

Compare expression of checked genes

Lus10011364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.