Plant FIBer expression Database

Lus10011366 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27210 39 / 0.001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006423
[exp]
268 / 6e-92 ND /
Lus10035217
[exp]
44 / 2e-05 AT3G27210 79 / 3e-18 unknown protein
Lus10041572
[exp]
44 / 4e-05 AT3G01860 77 / 1e-16 unknown protein
Lus10032051
[exp]
44 / 4e-05 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G058700
[exp]
46 / 5e-06 AT3G01860 83 / 4e-19 unknown protein
Potri.008G176300
[exp]
42 / 0.0002 AT3G01860 67 / 2e-13 unknown protein
Potri.001G332500
[exp]
41 / 0.0002 AT3G01860 96 / 3e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10011366 pacid=23159244 polypeptide=Lus10011366 locus=Lus10011366.g ID=Lus10011366.BGIv1.0 annot-version=v1.0
ATGGCGACAAAGAACGAAACAGACGGCGGGAAAAACTGCCGCCAATTTCAGTCATCATCGCCGTCAACTCCAGTTACTGGCGGCGGCCGCCAAGCAGAAA
GCTACTTCGATACCCATCCTTGGTTTGATTCCGATGGCGAGGAGTTCCACAGTGTTAATGGAGATTTTGGTTCCTCGCGATCATTCAGTCCGATCATTAT
CGACGAACGGATCGCCTCGAAATTCGAGCAAGAGCCTCAACCGGTTCAACCTCCGATCAGCACATGGAATCCAAACGAACGACGGAAAACTACAACTTCA
AGGTCTTCATCAAGCGTGAAGAAGCGACTGTCTGATTTCTTCAGCGAGAGCTTCAACCGCGATCTGGAGTTCGAGATCGAATCCGAACGAGCACAACAAC
AGCATCCTTCATCAAGTTACGTCGATAACTACTCCCCTTCGACAAGCACCGATCGGACTAGTAGTAGTCCACATGATCAGGCCGTGTCGAAGCAGGTGTT
CAGTGACCACGAAATGTCGACAGGGAAGAAGAAATCGGTGGCGAAACGAGCTTGCATCCCTTCATTGATGCGTAGCCTTAGCTGTGGTGGTGGCACGAGG
AAGCGAAGGCCGGGCTCCAGGGTTTAA
AA sequence
>Lus10011366 pacid=23159244 polypeptide=Lus10011366 locus=Lus10011366.g ID=Lus10011366.BGIv1.0 annot-version=v1.0
MATKNETDGGKNCRQFQSSSPSTPVTGGGRQAESYFDTHPWFDSDGEEFHSVNGDFGSSRSFSPIIIDERIASKFEQEPQPVQPPISTWNPNERRKTTTS
RSSSSVKKRLSDFFSESFNRDLEFEIESERAQQQHPSSSYVDNYSPSTSTDRTSSSPHDQAVSKQVFSDHEMSTGKKKSVAKRACIPSLMRSLSCGGGTR
KRRPGSRV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G27210 unknown protein Lus10011366
[exp]
0 1
AT3G62160 HXXXD-type acyl-transferase fa... Lus10004527
[exp]
3.3 0.9851
AT1G43790 TED6 tracheary element differentiat... Lus10018925
[exp]
5.5 0.9804
AT4G35350 XCP1 xylem cysteine peptidase 1 (.1... Lus10030722
[exp]
7.1 0.9798
AT4G18425 Protein of unknown function (D... Lus10013969
[exp]
8.0 0.9794
AT5G48920 TED7 tracheary element differentiat... Lus10028626
[exp]
8.1 0.9752
AT1G63120 ATRBL2 RHOMBOID-like 2 (.1) Lus10024497
[exp]
8.2 0.9690
Lus10029977
[exp]
9.6 0.9430
AT1G10460 GLP7 germin-like protein 7 (.1) Lus10029214
[exp]
10.4 0.9750
AT1G55180 PLDALPHA4, PLDE... phospholipase D alpha 4 (.1) Lus10036361
[exp]
10.9 0.9749
AT5G05950 MEE60 maternal effect embryo arrest ... Lus10016474
[exp]
11.2 0.9746

Lus10011366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.