Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00620 519 / 0 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) AT4G00600 414 / 8e-146 Amino acid dehydrogenase family protein (.1) AT2G38660 411 / 8e-144 Amino acid dehydrogenase family protein (.1.2.3.4) AT3G12290 393 / 1e-137 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006425 [exp] 672 / 0 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10022670 [exp] 595 / 0 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10018843 [exp] 518 / 0 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10017822 [exp] 517 / 0 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 489 / 1e-170 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10034187 [exp] 414 / 1e-144 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10043398 [exp] 409 / 7e-143 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157100 [exp] 533 / 0 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Potri.006G114100 [exp] 431 / 2e-151 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4) Potri.011G098600 [exp] 395 / 2e-138 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1) Potri.014G080701 [exp] 103 / 1e-27 AT4G00620 101 / 1e-27 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00763 [flax] [poplar] THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02882 [flax] [poplar] THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011368 pacid=23159195 polypeptide=Lus10011368 locus=Lus10011368.g ID=Lus10011368.BGIv1.0 annot-version=v1.0 ATGAACTTCATCACCGATTGTTCTTCACCATCAGAAACGGCTCGTCTCCTCCCCTTCGGCTCTACCACCGCCGCCGCCTACCTCCGCCATATCAGCCGCT GCTCCATTCCCGGTTATCTCAAATCCCGCAGCCTCCATTCTTCTTCTTCAGTTCCCCTAACTGTAAAAGCAATGGCCAGCTCAGTTTCAGCTACAGTGAT CGACGGGAAATTGACGGCGAAGGAAATCAGAGAGGAGATAGCAGGTGAAGTATCGAGAATGAAGGACGCGATCGGCGTCGTTCCTGGACTAGCAGTAATG CTCGTTGGTGACAGAAAGGACTCCGCAACTTACGTACGGAACAAGAAGAAAGCTTGTGAATCCGTCGGGATCAATTCTTTCGAAGTTTGCCTCCCGGAGG ATTCTTCCGAACCTGAAGTCCTTAAGTTCATCTCCGACTTCAATCAAGACCCTGCAGTTCATGGCATCCTTGTTCAGCTGCCCTTACCAAAGCATATGAA TGAACAGAACATTTTGAATGCTGTTAGCATAGAGAAAGACGTCGATGGTTTCCACCCCTTGAACATCGGTCGTCTTGCTATGCGTGGAAGGGATCCCTTG TTTGTACCGTGTACTCCGAAAGGATGCATCGAGTTGTTGCATAGGTTTGGTGTTCAAATCAAAGGGAAGAGAGCGGTTGTGATTGGCCGGAGCAATATCG TAGGGATGCCTGCTGCTCTACTGCTCCAGAGGGAGGATGCTACTGTAACGATCGTGCACTCCAGGACCGGTAATCCAGAACAGATAGTGAAAGAAGCGGA TATAGTGATCTCTGCTGTTGGCCAACCTAACATGGTGAGAGGGAGCTGGCTAAAGCCTGGAGCTGTTGTCATTGATGTCGGCATCAACCCAGTTGAGGAT GCAACGTGTCCTCGAGGTTACAGATTGGTCGGGGATGTATGCTACGAGGAGGCTAGCAGAGTCGCTTCAGCTGTTACTCCAGTACCTGGCGGAGTCGGTC CGATGACCATAGCAATGCTTCTATCGAATACGCTCACCTCAGCAAAGAGAATACACAGCTTTCAGTGA
AA sequence Show only first row Show all	>Lus10011368 pacid=23159195 polypeptide=Lus10011368 locus=Lus10011368.g ID=Lus10011368.BGIv1.0 annot-version=v1.0 MNFITDCSSPSETARLLPFGSTTAAAYLRHISRCSIPGYLKSRSLHSSSSVPLTVKAMASSVSATVIDGKLTAKEIREEIAGEVSRMKDAIGVVPGLAVM LVGDRKDSATYVRNKKKACESVGINSFEVCLPEDSSEPEVLKFISDFNQDPAVHGILVQLPLPKHMNEQNILNAVSIEKDVDGFHPLNIGRLAMRGRDPL FVPCTPKGCIELLHRFGVQIKGKRAVVIGRSNIVGMPAALLLQREDATVTIVHSRTGNPEQIVKEADIVISAVGQPNMVRGSWLKPGAVVIDVGINPVED ATCPRGYRLVGDVCYEEASRVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHSFQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10011368 [exp]	0	1
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	5.0	0.7189
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	12.0	0.6553
AT5G41190			unknown protein		Lus10008488 [exp]	18.3	0.7104
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10039528 [exp]	50.2	0.6284
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	52.9	0.6377
AT4G12130			Glycine cleavage T-protein fam...		Lus10024566 [exp]	60.8	0.6016
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	63.4	0.6287
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10006425 [exp]	81.4	0.5807
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	85.7	0.5906
AT1G18850			unknown protein		Lus10024247 [exp]	93.2	0.5787

Compare expression of checked genes

Lus10011368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.