Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24330 988 / 0 ARM repeat superfamily protein (.1) AT1G27910 964 / 0 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G67530 962 / 0 ARM repeat superfamily protein (.1.2) AT2G28830 191 / 1e-50 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 184 / 5e-49 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 169 / 3e-44 PUB11 ARM repeat superfamily protein (.1) AT5G67340 169 / 7e-44 ARM repeat superfamily protein (.1) AT5G42340 163 / 4e-42 PUB15 Plant U-Box 15 (.1) AT1G71020 153 / 1e-39 ARM repeat superfamily protein (.1.2) AT5G01830 136 / 3e-33 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006427 [exp] 1479 / 0 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10015801 [exp] 1196 / 0 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 1193 / 0 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10028307 [exp] 279 / 9e-83 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10041754 [exp] 277 / 6e-82 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10007511 [exp] 181 / 5e-48 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 167 / 3e-43 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 164 / 2e-42 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 150 / 1e-37 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G058000 [exp] 1093 / 0 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 1066 / 0 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 327 / 2e-100 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G122100 [exp] 308 / 2e-92 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.005G228100 [exp] 299 / 3e-90 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.002G009900 [exp] 191 / 2e-51 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 174 / 1e-45 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 173 / 2e-45 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 170 / 2e-44 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 167 / 1e-43 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10011370 pacid=23159217 polypeptide=Lus10011370 locus=Lus10011370.g ID=Lus10011370.BGIv1.0 annot-version=v1.0 ATGGATATTTCCGAGGTTGAAGAAAGTCTTTTTGCAGCTAGTGACGCCAAGTTGCATGGCGAAATGTGCAAAGCTCTCTCAACAATTTATTGCAAGATCT CGTCTGTTTTTCCCTCATTGGAAGCAGCTCGGCCTAGGAGCAAGTCTGGCATACAGGCACTATGTTCACTCCACATAGCACTTGAAAAGGCAAAAAATGT TCTGCTGCATTGTTCAGAATGCAGCAAACTCTACTTGGCTATAACTGGAGACTCTGTCCTTCTAAAATTCAAAAAGGCAAGATCTGCCCTTGTTGACGGC CTTAGGCGAGTTGAAGATATTGTTCCGCAATCTATTGGTTGTCAAATTTTGGAGATTATAGATGAACTCGAGGGGATGAGATTTGCACTTGATCCATCAG AGAAGCAAACTGGTGAGGAGATAGTTGCCTTGCTTCAGCAAGGCAGAAAATTTGACAACTGCAATGACGGAAATGAGCTCGAGTCCTTTCACCAAGCTGT TACTAAGCTCGGTATCACGTCTTCACGAACGGCTCTCACGGAGAGGAGGTGTCTTAAGAAACTAATCGATCGAGCTCGTGTGGAGGAAGACAAGCGGAAA GAATCAATTGTGGCTTATCTGTTACATCTCATGAGGAAATATTCCAAGCTATTCAGAAGTGACCTCACAGATGATAATGATTCACAGGGCGGCTCGAATC CTTGTTCGCCCACTGTTTTTGGTTCACTCGAGGATAATCATATTCATGCATTTGACCGCCATCTGTCAAAGATCAGTTCTTTCAACTTCAAGACGAATTT CAGAAGGTCCGGGCAGATGGGTATTCCACCGGAGGAGTTGAGGTGTCCGATATCGTTGCAGCTTATGTACGATCCGGTCATCATTGCTTCAGGGCAAACA TACGAGAGGATTTGTATTGAGAAGTGGTTTAGCGACGGACACGAAACCTGTCCAAAAACTCGACAACAGCTACCTCATTTGTCTTTGACTCCGAATTATT GTGTCAAAGGTCTTATCACTACTTGGTGTGAGCAAAGTGGAGTTCCAGTTCCCGAGGCTCCTCCGGAATCCCTGGATCTGAATTACTGGAGGCTGGTGCT ATCCCAGTCTGACGACAAGGTCAATTCCGATGTAACAAAGAGTGCGAAAGTGGTTCCTTTAGATGAGAGCGGAACCATCGAGGAGGTTGACGAAAGCGCA ATGGAAAGTGAAGATAAACCTGACGAATATTTCGAGGTTGATTCGCTGACAAGGTATCAGGAACTTCTGGCCATACTGAACGATGAGAACGAAAAGGTGC AGGAAAAGTGCAAGAGAGTTGAAGAAGTGAGGTTCTTGCTGAAAGATGACGAAGAAGCTAGGATATACATGGGTGCTAATGGATTCGTTGAAGCGCTTAT GCAGTTTCTTCAGTCGGCAGTCCGTTCCAACGATGGATCGGCTCAGGATAATGGCGCCATGGCACTGTTTAACCTTGCAGTCAACAACAACAGGAACAAA GAAATGATGTTATCCGCCGGAATCATCTCACTGTTGGAAGAAATGATCTCCTGCTCCGACTCCCACGCATCAGCAACTGCTCTCTATCTAAACCTCTCTT GTCTCGAAGCCGCCAAGTCAATCATCGGATCAAGTCTAGCTGTCCCGTTCCTAATCCAGATCCTCCAAGGACAATATCCAACCCAGTGCAGACTCGACGC CCTCCACACCCTCTTCAATCTCTCATCCAGTCCATCCAACATCACAAACCTCCTCTCCGCCGGCATCATCAATGGCCTACAATCCCTCCTCTCTTCCCTC AGCAATGATCATCACTCCTGGACCGAAAAATCCATAGCAGTAATCCTCAACCTATGCTCCAATCAATCAGGTAAAACAGAGATTGTAGCATGTTCCGACC TGATCAGCGCCATAGCATCTTTGCTAGACGCAGACGAACTAATCGAGCAAGAACAAGCCGTCGCGTGCCTCTACATGCTCTGTAACGGCGACGAAGTATG CAGTCAGATGGTTTTACAAGAAGGAGTAATTCCTTCACTAGTCTCGATCTCCGTCAATGGCACCACCAGGGGGAAAGACAAGGCGCAGAAGCTTCTCATG CTGTTCCGCGAACAGCGTCAGCAGCAAAAGCAAGTAGTACAGCCGCAGCCTCCAGCTCCGCCGGCTCCCTCTACCGACATGGCGCTGGTACGAGCTAGTA GCTCTAGACCGGCGGAGAATCCGGAAAAGAAGCCGATAAGCAAAGTGGCGTCGAAAAGGAAGATGAGTAGAGCCTTCAGCTTGTTATGGAAGAACAAGAG CTTCTCACTTTATCCATTCTGA
AA sequence Show only first row Show all	>Lus10011370 pacid=23159217 polypeptide=Lus10011370 locus=Lus10011370.g ID=Lus10011370.BGIv1.0 annot-version=v1.0 MDISEVEESLFAASDAKLHGEMCKALSTIYCKISSVFPSLEAARPRSKSGIQALCSLHIALEKAKNVLLHCSECSKLYLAITGDSVLLKFKKARSALVDG LRRVEDIVPQSIGCQILEIIDELEGMRFALDPSEKQTGEEIVALLQQGRKFDNCNDGNELESFHQAVTKLGITSSRTALTERRCLKKLIDRARVEEDKRK ESIVAYLLHLMRKYSKLFRSDLTDDNDSQGGSNPCSPTVFGSLEDNHIHAFDRHLSKISSFNFKTNFRRSGQMGIPPEELRCPISLQLMYDPVIIASGQT YERICIEKWFSDGHETCPKTRQQLPHLSLTPNYCVKGLITTWCEQSGVPVPEAPPESLDLNYWRLVLSQSDDKVNSDVTKSAKVVPLDESGTIEEVDESA MESEDKPDEYFEVDSLTRYQELLAILNDENEKVQEKCKRVEEVRFLLKDDEEARIYMGANGFVEALMQFLQSAVRSNDGSAQDNGAMALFNLAVNNNRNK EMMLSAGIISLLEEMISCSDSHASATALYLNLSCLEAAKSIIGSSLAVPFLIQILQGQYPTQCRLDALHTLFNLSSSPSNITNLLSAGIINGLQSLLSSL SNDHHSWTEKSIAVILNLCSNQSGKTEIVACSDLISAIASLLDADELIEQEQAVACLYMLCNGDEVCSQMVLQEGVIPSLVSISVNGTTRGKDKAQKLLM LFREQRQQQKQVVQPQPPAPPAPSTDMALVRASSSRPAENPEKKPISKVASKRKMSRAFSLLWKNKSFSLYPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24330			ARM repeat superfamily protein...		Lus10011370 [exp]	0	1
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	8.6	0.7945
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	13.4	0.7618
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	15.2	0.7364
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	18.8	0.7866
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	20.8	0.7929
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10028736 [exp]	25.7	0.7820
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	26.3	0.7700
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	26.4	0.7928
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10039598 [exp]	31.3	0.7808
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10029371 [exp]	33.9	0.7754

Compare expression of checked genes

Lus10011370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.