Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67570 499 / 3e-175 Protein of unknown function (DUF3537) (.1) AT3G20300 199 / 3e-58 Protein of unknown function (DUF3537) (.1) AT1G50630 181 / 9e-52 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 175 / 2e-49 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT2G21080 165 / 4e-46 unknown protein AT4G03820 149 / 6e-40 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006430 [exp] 717 / 0 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10043011 [exp] 379 / 4e-128 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 288 / 8e-94 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 215 / 2e-64 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 213 / 5e-62 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 200 / 7e-59 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 179 / 5e-51 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 168 / 7e-47 AT2G21080 450 / 5e-157 unknown protein Lus10032512 [exp] 108 / 2e-28 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178100 [exp] 593 / 0 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.015G092200 [exp] 426 / 6e-147 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 418 / 1e-143 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.001G356200 [exp] 207 / 1e-61 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 176 / 7e-50 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 166 / 6e-46 AT2G21080 447 / 9e-156 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10011371 pacid=23159269 polypeptide=Lus10011371 locus=Lus10011371.g ID=Lus10011371.BGIv1.0 annot-version=v1.0 ATGGCGGATCCTCATCTTCTTCCTCCCCTTCCGCCTCCTCCGCCTCCTCTACCCCCTCCTATTCTTGAAACCCACTTGCAAATTGACCCTTCACCCAACC TCGCTACCCACATAACGCCTCTCCTCAATTTCGCCCAGAACAATGGCTACAACAATAATGAAAGTCATCACCACGAAACCCTCTCTGCTCACGATAATGA TCTGGATCAAACTCTGCAGAGGCTCGAGAATTTCCTCTGCTTTCTGGGCTTCTGCCAATCTTCCGTTTCCAGCTTCCTTGTTTCTTGGACAGTGTTTTTA CTGATTGGCGTAGCTCTCCCAGTTGTAATACTTGAACTATCACACTGTCCTGGGTGCGAGAAGTTCCAGATCAAGAACTTCGAACTGGATATTGTGGCGT CACAGGCTTGTCTGGCGGCTGTTTCATTGATTTGCTTGTCTCATAATATGCGCAAGTATGGTATTAAGAAGTTTCTCTTTGTGGACCGTTATAGTGGCCA GATGACTCGCTTGAGCCGTCAGTATATTGCACAGATAAAGGATTCATTGCGTTTGCTAGTTCTTTGGTCGTTGCCGTGTTTTGTTCTCAAGGTCGTACGG GAAGTGATTCGTATATCATACGTAAAACAAGAATCATGGTGGGTCTCTACTTCTATACTGTTCGGGTTAATAATATCGTGGAGCTATGTGAGTGCTATAT CACTAGCAGCGAGCGTAGTCTTCCATATGGTATGCAACCTGCAAGTTATTCACTTTGAGGACTATGGGAAGCTCTTGGAAAGGGAGTCTGATGTTCTGAT ATTCATCGAGGAACACATTCGCCTTCGTTATAATCTTTCCAAGATCAGCCATAGGTTCCGCATTTTTCTCCTTCTGCAGTTCATTGTTGTCACGGCTAGC CAGTTCATGACACTCTTCCAGGTCACTGGATACAGTGGCATCATCACCGCCATTAATGGAGGTGATTTCGTGGTCTCGTCGATCGTTCAGGTAGTTGGAA TAATCGTTTCGTTGCATGCAGCTACAAGAATATCCCACAGAGCGCAGGCTATTGCTTGCCTGGCGAGTCGGTGGCACGCTTTAGCAACATGCAACGCTGT AGCTGCCGGAAGCTCGGAGGCGTCTGGATATTCGTCCACGAACTCTTTGCTGAGGTGCAATTCGGAGAGCGATTTGGAATCATTCGACTACATTGCAGTG CCTACAAACACTCAATTGGCTTCTTATATGTCATCTTATCACAGGAGGCAAGCCTTCGTGATGTATCTGCAGAACAATCCTGGAGGCATCACGATTTTCG GGTGGACCGTTGACCGGGGACTCCTCAACACGATCTTCTTCATCGAGCTCACCCTCGTCACTTTCTTGCTCGGGAAGACTATAGTCTTCAGCAGCTCCAG CTGA
AA sequence Show only first row Show all	>Lus10011371 pacid=23159269 polypeptide=Lus10011371 locus=Lus10011371.g ID=Lus10011371.BGIv1.0 annot-version=v1.0 MADPHLLPPLPPPPPPLPPPILETHLQIDPSPNLATHITPLLNFAQNNGYNNNESHHHETLSAHDNDLDQTLQRLENFLCFLGFCQSSVSSFLVSWTVFL LIGVALPVVILELSHCPGCEKFQIKNFELDIVASQACLAAVSLICLSHNMRKYGIKKFLFVDRYSGQMTRLSRQYIAQIKDSLRLLVLWSLPCFVLKVVR EVIRISYVKQESWWVSTSILFGLIISWSYVSAISLAASVVFHMVCNLQVIHFEDYGKLLERESDVLIFIEEHIRLRYNLSKISHRFRIFLLLQFIVVTAS QFMTLFQVTGYSGIITAINGGDFVVSSIVQVVGIIVSLHAATRISHRAQAIACLASRWHALATCNAVAAGSSEASGYSSTNSLLRCNSESDLESFDYIAV PTNTQLASYMSSYHRRQAFVMYLQNNPGGITIFGWTVDRGLLNTIFFIELTLVTFLLGKTIVFSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	0	1
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	1.4	0.7955
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	1.7	0.7839
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	4.8	0.7414
AT1G29530			unknown protein		Lus10025373 [exp]	5.6	0.7996
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	7.9	0.7637
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	10.2	0.7429
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	12.6	0.7654
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	14.6	0.7783
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	15.9	0.7307
AT5G53420			CCT motif family protein (.1.2...		Lus10005008 [exp]	16.0	0.7510

Compare expression of checked genes

Lus10011371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.