Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24340 870 / 0 EMB260, EMB2421 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT3G24200 44 / 0.0003 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006431 [exp] 167 / 2e-48 AT1G24340 100 / 6e-28 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10000752 [exp] 44 / 0.0006 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178400 [exp] 912 / 0 AT1G24340 967 / 0.0 EMBRYO DEFECTIVE 260, EMBRYO DEFECTIVE 2421, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G051200 [exp] 43 / 0.0007 AT3G24200 663 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10011372 pacid=23159265 polypeptide=Lus10011372 locus=Lus10011372.g ID=Lus10011372.BGIv1.0 annot-version=v1.0 ATGGCGGTATCGCGGCTTATGAAGGGGATCACCTCCCTTGCTGAACCCAGAACGAAGAAAGTCCATTCCTTCGTCAGAAGAGATTTCTCAGCTTCAAGTA GCTCATCAGTTGCAGCTGATGATTCGATTCTCCCAGTCTTGATCGTCGGTGCTGGTCCCGTCGGCCTCGTTCTCTCCATGCTCCTGACGAAATTGGGGGT AAGATGTTCTATACTGGAGAAGAAGACGGAATTTTCGAGCCATCCGCAAGCACATTTCATCAACAACCGATCCATGGAGATATTCCGCGAATTGGATGGA CTCTCGGAAGAAATTGAGAAGTCGCAGCCTGCCGTTGATCTATGGAGGAAGTTCATATACTGCACCTCAATCACTGGCCGGATTCTCGGTTCAGTTGACC ACATGAAACCCCAAGATTTCGAGAAAATCATCAGCCCAACTTCAGTTGCTCACTTCTCGCAGTACAAGCTCAATCGGTTGCTACTCAAGAAGCTCGAAGG TCTGGGTTTCCGTGTTGGAGAGGAGCTACTGATGGGAACAGACTGTCTCTCGATTGATACGACAGATGATCAGTGTGTTACAGTAACTACGAAAGGTGCA AACAGCAAAGAGAATAAGATCCGGTGCAATGTCCTCGTTGGTGCGGATGGTGCCGGAAGTAGAGTTAGGAACCTTGTAGGGATAGAACTGAGAGGTGAAA AGGACTTGCAGAAGCTTGTTAGTGTCCATTTTAGAAGTAGGAACCTTGGACGTTACCTGCTCAACGAAAGACCCGGGATGTTGTTCTTTATTTTCAATAC TGAAGCCATTGGAGTCCTTGTTGCTCATGATGTCAACCACGGTGAATTCGTGTTGCAGATACCATTGTATCCACCTCAGCAGAGTCTTGACGATTTCGAC CCTCAGAGTTGCAAGAAGTTGATCTTCGATTTGGCGGGTCAAGAGCTTCCGGACATTGAAGTGATCGATATAAAGCCATGGGTGATGCATGCTGAAGTCG CTGAGAAGTTTGTATGCTGCAACGATCGAGTAATTCTTGCTGGTGATGCTGCCCATCGGTTCCCTCCAGCTGGTGGCTTTGGAATGAATACAGGCATTCA GGATGCTCACAATCTCGCCTGGAAAATCGCTGCTTTCGTAAAGGGTATTTCGCCATCTCCATTACTTCGTACTTACGAAACGGAACGAAGGCCGATAGCA CTTTTTAACACAGAACTTAGTGTGAAAAACTTCAGAGCAGCCATGGAAGTTCCTGCTGCCATTGGCCTCGATCCCACTGTTGCGAATTCGGTCCATCAAG TTATCTCTACTGTTTTACCATCTGGATTACAAAAGACAGTTCTGGACAGAATTTTCTCGATCGGGCGTGCACAGAGCTCCGAGCTTCTTCTGAACGAAAG CAACCCGGTTGGATCTTCAAGGTTAGCTAAACTGAGGCGTATATTTGATGAAGGAAAGAGTCTCCAACTCCAGTTTCCTGCAGAGGATCTTGGTTTCCGG TACCTCGAGGGAGCGGTAATTTCGGATAGCAATGGTGTGAATCCCACCGCAGAACCACCTAGCGGTCGAAGAAAGGAGTATGTTCCTTCTGCAGATCCAG GATGCAGGCTGCCCCATATGTACACACGGCCGTTGTCAAATCCGTCAAGTAAGGCGACTCTTTCAACACTCGATCTTATACCTGTGGACAAACTGGAGTT CCTTCTAATGGTGGGACCTCATGACGAATCCTACAAACTTTCTCGAGCCGCATTCGAGGTTGCAGAAGAGTGCGGGGTCTCGGTGAAAGTCTGCATATTG TGGCCACCGGGAATTCTCGATGGAGATGTGGAGAAGAGCAAGGCAGCATTGTCCCCTTGGTCCAACTTCATTGATGTAGTTGCAGAGGAAGTTAAGAACT CGAACTCGAAGTCGGTTGACCCGGTTTCGTGGTGGGATATGTGTGAGATGTCCGATAAGGGAGCCATTTTCGTCAGGCCGGATCAACACATAGCTTGGCG GGCCAAATATGGTGTCGACGAGGATGTAAATCTGGTTATGAGAAAGGTTTTCTCTGCTGTTCTTGGAGTGCAGTAA
AA sequence Show only first row Show all	>Lus10011372 pacid=23159265 polypeptide=Lus10011372 locus=Lus10011372.g ID=Lus10011372.BGIv1.0 annot-version=v1.0 MAVSRLMKGITSLAEPRTKKVHSFVRRDFSASSSSSVAADDSILPVLIVGAGPVGLVLSMLLTKLGVRCSILEKKTEFSSHPQAHFINNRSMEIFRELDG LSEEIEKSQPAVDLWRKFIYCTSITGRILGSVDHMKPQDFEKIISPTSVAHFSQYKLNRLLLKKLEGLGFRVGEELLMGTDCLSIDTTDDQCVTVTTKGA NSKENKIRCNVLVGADGAGSRVRNLVGIELRGEKDLQKLVSVHFRSRNLGRYLLNERPGMLFFIFNTEAIGVLVAHDVNHGEFVLQIPLYPPQQSLDDFD PQSCKKLIFDLAGQELPDIEVIDIKPWVMHAEVAEKFVCCNDRVILAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIAAFVKGISPSPLLRTYETERRPIA LFNTELSVKNFRAAMEVPAAIGLDPTVANSVHQVISTVLPSGLQKTVLDRIFSIGRAQSSELLLNESNPVGSSRLAKLRRIFDEGKSLQLQFPAEDLGFR YLEGAVISDSNGVNPTAEPPSGRRKEYVPSADPGCRLPHMYTRPLSNPSSKATLSTLDLIPVDKLEFLLMVGPHDESYKLSRAAFEVAEECGVSVKVCIL WPPGILDGDVEKSKAALSPWSNFIDVVAEEVKNSNSKSVDPVSWWDMCEMSDKGAIFVRPDQHIAWRAKYGVDEDVNLVMRKVFSAVLGVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Lus10011372 [exp]	0	1
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	1.7	0.9100
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	18.5	0.9044
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032632 [exp]	19.9	0.8710
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	20.1	0.8606
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	21.2	0.8690
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	28.0	0.8852
					Lus10024932 [exp]	28.4	0.8541
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	30.4	0.8560
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	32.2	0.8596
AT2G28360			SIT4 phosphatase-associated fa...		Lus10016089 [exp]	33.3	0.8692

Compare expression of checked genes

Lus10011372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.