Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67600 241 / 7e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 234 / 5e-80 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G21610 190 / 2e-62 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT3G61770 127 / 2e-36 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 89 / 4e-22 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006432 [exp] 310 / 6e-110 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 216 / 2e-73 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10035299 [exp] 184 / 6e-60 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10000883 [exp] 179 / 5e-58 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 178 / 2e-57 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 169 / 3e-53 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030253 [exp] 127 / 6e-38 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 74 / 4e-16 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001841 [exp] 74 / 5e-16 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056600 [exp] 263 / 3e-91 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.011G087100 [exp] 194 / 4e-64 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.014G156000 [exp] 178 / 1e-57 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 172 / 1e-55 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G171300 [exp] 135 / 2e-39 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 67 / 1e-13 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10011373 pacid=23159219 polypeptide=Lus10011373 locus=Lus10011373.g ID=Lus10011373.BGIv1.0 annot-version=v1.0 ATGGGGGATCAGACCACCGGTGGGTCTTCTTATTCTTCGTCGTCGTCGATTTTCACTAACTATCCTCTGATAGCTGCACTCGTCGCGTTCGCCGTCGCGC AATCTATCAAGTTCTTCACCACCTGGTACAAAGAAAATCGATGGGATTTGAAGCAGTTCATTGGATCCGGTGGAATGCCTTCTTCCCATTCGTCCACTGT TTGTGCACTTGCCATGAGCATCGGGTTCCAGGAAGGCTTCGGAGGATCACTTTTCGCGGCTGCGTTGATCTTATCATGCATTGTGATGTATGATGCTACT GGTGTAAGACTTCAGGCTGGACGCCAAGCCGAGGTATTGAATCAAATTGTATACGAACTGCCTGCTGAACATCCTTTGGCTGAGAGCATACCTCTTCGCG AGCTTCTCGGTCACACTCCAGCTCAGGTCATCGCCGGTAGTCTACTTGGAGTTGTAACGGCTATCATTGGCCACCTGATCACAATGACTACTAGTCAAAG TTGA
AA sequence Show only first row Show all	>Lus10011373 pacid=23159219 polypeptide=Lus10011373 locus=Lus10011373.g ID=Lus10011373.BGIv1.0 annot-version=v1.0 MGDQTTGGSSYSSSSSIFTNYPLIAALVAFAVAQSIKFFTTWYKENRWDLKQFIGSGGMPSSHSSTVCALAMSIGFQEGFGGSLFAAALILSCIVMYDAT GVRLQAGRQAEVLNQIVYELPAEHPLAESIPLRELLGHTPAQVIAGSLLGVVTAIIGHLITMTTSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	0	1
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	2.0	0.9026
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	4.5	0.8914
AT4G13530			unknown protein		Lus10041074 [exp]	4.5	0.8888
AT5G62440			Protein of unknown function (D...		Lus10009570 [exp]	4.9	0.8665
AT1G11440			unknown protein		Lus10007616 [exp]	5.0	0.8433
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	5.2	0.8906
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	6.0	0.8878
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	7.5	0.8801
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	7.7	0.8886
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	7.9	0.8828

Compare expression of checked genes

Lus10011373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.