Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27850 200 / 3e-52 unknown protein AT2G40070 80 / 5e-15 unknown protein AT3G08670 60 / 7e-09 unknown protein AT3G09000 56 / 2e-07 proline-rich family protein (.1) AT2G38160 46 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006433 [exp] 1457 / 0 AT1G27850 501 / 1e-158 unknown protein Lus10030402 [exp] 86 / 6e-17 AT2G40070 561 / 0.0 unknown protein Lus10040188 [exp] 69 / 2e-11 AT2G40070 533 / 0.0 unknown protein Lus10021382 [exp] 66 / 1e-10 AT3G08670 432 / 4e-145 unknown protein Lus10035528 [exp] 64 / 5e-10 AT2G40070 280 / 4e-83 unknown protein Lus10002493 [exp] 61 / 3e-09 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 60 / 7e-09 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 60 / 1e-08 AT2G40070 288 / 5e-86 unknown protein Lus10024526 [exp] 58 / 3e-08 AT2G40070 66 / 2e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178600 [exp] 642 / 0 AT1G27850 567 / 0.0 unknown protein Potri.010G056200 [exp] 628 / 0 AT1G27850 240 / 1e-64 unknown protein Potri.008G066900 [exp] 87 / 2e-17 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 82 / 7e-16 AT2G40070 368 / 6e-121 unknown protein Potri.010G177000 [exp] 66 / 5e-11 AT2G40070 82 / 9e-17 unknown protein Potri.016G139500 [exp] 63 / 1e-09 AT3G08670 245 / 2e-73 unknown protein Potri.016G114900 [exp] 55 / 2e-07 AT2G40070 352 / 7e-114 unknown protein Potri.006G110700 [exp] 45 / 0.0003 AT3G08670 251 / 1e-75 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011374 pacid=23159222 polypeptide=Lus10011374 locus=Lus10011374.g ID=Lus10011374.BGIv1.0 annot-version=v1.0 ATGCCGCCGTCTCCAGGGTTGAGATTCTCTCCAGGGAGGGAGGCGAAAGCTGGTGGTGGTGCTGGTGATAACCATAAGAGAGGGAGAAGTCTTGAAGGTG GGATTCTGTTCAAGGAGAAAGATGATGATCTTGCCTTGTTTAATGAGATGCAGAGTAGGGAGAAGGAGGATTTCTTGCTCCAGTCTACTGATGATTTCGA AGACTCGTTCTCGACGAAGCTGCGATACTTCTCGGATTTGAAGCTTGGGATCTCGGTTGCTGGACGTGGGGAGTGTAGTGGGATGTTAAATGCTGAAGGG GAGAAGAATGACTATGATTGGTTAATAACTCCTCCGGAGACCCCTCTTTTCCCTTCATTGGACGATGAGCCGGTTCCAGCTAGTCTTCCGGCAAGGGGTA GACCTCGAAGTCAACCTATTTCCATTTCGAGATCATCTACGATGGAGAAGAGTTACAGAAGCAGTAGAGGCAGTGCGAGTCCTAATCGTTCAAGTCTATC TCCTCGCTCTGGTAGCAGTACATTGCAGTCAAGGGGGAGGCCATCATCATCTACACGTAATTCTAGTCCAACTCCTAGTCAACGGCCAGCTACTCCATCA CGTAGACCATCTACTCCTCCAAGTAAAGCCTCACCGTCTGGTCCAAGGTCTTCAACACCTACTCCAAGGAGAGCAAGCACTGGGGGGTCGGGGCAAAGAG GGGTTTCTCCTGTACGGTCTACAGGTGGGAACTCTGTTTCTCCAAAAGTAAAGGCGTGGCAGTCTACCATACCTGGTTTCTCCTCTGAAGCACCACCCAA TCTTCGTACTTCTTTGGGTGATCGACCGGCATCATATGTGAGGGGATCCTCACCAGCTTCCAGGAATGGCAGGCAATCAATGTCTCCAATTGCTTCTAGA AGTGCCAGTTCTTCGCACAGTCAAGATCGAGATAGAACAAGTTCATATAGTAAAGGCTCAGTTGCGTCATCTGGTGATGACGACGTAGACTCTTTGCAAT CAGTTCATGTGGGCAGCTTAGATCGATCCAGAGGAGTAGGTGGATTTTCGAACAATAGAACTTCGGCATTGCCAAAGAAACCGGCTAGAGTTTTCTCCCC AAGTTCTGCTCCAAAACGGTCATTTGACTCTGCCATTCGTCAAATGGATCACAGGAAAAGTCCACAGAATATGTTTAGGCCACTCCTGTCAAGTGTCCCA AGTACTACCTTCTATGCCGGAAAAGGAAGTTCGGCCCAACGCTCTTTGGTGTCTATGACTTCTTCGGTTACAACCAGTAGTAACGCAAGCTCAGACCAAG GAGCTAGTCTTGCACCTGATACTAATGGAAATGACCACCATCACGATATCACGACTATTGAAACCGGGTACAGCAGTGTACGGGAAGATATCTTTGCCTT TGATAAGGCAGATGACCTGAATGAAGATTGCATAGTGGATGTGGTACCTCAGTCTCGGTCTCAGCTTCAAGTTCCTGATAAAGATTCTTTAACAAAAAGC GAGCCTGAGGACTCCGGAGAATTCAGCCAACAAGATGTCGGTGGTGAAATCAGTTCTGCATCTGATGCTATGTTTGTTCGAGACAGTTCTTGCAGCCTTG GCATAAAAATTTGTTCTAGATGTGGTTGCAAATACCGTGATGTTGAGGCAATGGAAAAAACCGATATTAATCTTTGCGAAGACTGCAGTAAGCAAGACAG TGTTGTGTCTTGCAACGCTCTGGAGACTGTAACGGCTGAGAACCCTCTGCAACTGTCCATTATTAAAGCCGAAGAGAGTAAACAAATTGATGAATCGAAG CTAATTATTGATGTACCGGAATTGCAATCCCAAATGGAAAATGTGGTTTATTCTAGTGATGCTTTGAGCCACGAGCCGAGCCTTATGCATCCACAGGAAG GCTCGGTTGCCCCTTCAGCAGAGGACGGAAAGGAGCACACGATGACCGATAAGAAAGGATTTACGGAACCAGCACTTGTCCGTAGCGTATCTGATATTGT CACCGGGACTCTCCAATTGCCGAACTATAATGAAGGTGCTGGCATCTCAGTAGTGCTTAGGAAATCCAGCAGCATCAAAGGGCATGTTTTCCAAGGCAGG AGCTTTACTGCCTCCAGTGTTAGCTACGATGACGTGTCTTTTACAAGAGACAGTGCAAACAGCTTGAGAAGTTCCATTGGTCATGGCAGCACATCAGGAT CATCCTCTGTTGATTTATACTCAGCTAGGCAAATGGAAGCAGCCCGTATTCAGCGGCAACTGAGTGGCAGCAAAAAGGGTGATCTTGACAGTGCCAGACC TCTAAGCCGTGGGTCGTCCTTTTCCGGGTCTGTAAACCTTGGTCACCAAGTTGCTGGACTCGGTACGAGTACAGTTGAAGCAAGGGACGAAGTTGGTGGA TCAGTGGTAATCAACTCTGAAAATAATGAAGTTGATGGCTCGAAAATGTCTTCCGCTGGTCCAGTAATCCCAGACGAATATATATGTGAGAGAAGTGACA GCAGCAGAACTATGGAGTTAGAGGAGCATTCGGCATTACCTCCGACCTCTAATGAGGAAGCGTATCAAAACGATGCAGTAAATCCCTCAGATACGGATGC AGCATCTCCCTTGGAATCCTCTCTTGAAGCCAAAAACAAAGCTGAGGTTCCTGGTCACAGTAGGCTTGCATCGATATCGGAAATCGAAGCTGAGGATCAT CGTCTGAGTCATCGAAGGTCAGAGAGCATCGACCTCTCAGCTAATTTGAGAATCATGGCGGACGAAATCGAAGATCCTTCGATATCTGCACCATCAGACA AGGATGCCACTACTCCCATCCTGGAAAATAACACCTCAGATCGTGAACGAGGTGTTTTAGACGAGTCGACGGTAATGGTGGAATGTTCCGGTGGCAACAA GGCAAGAAGCCTAACCCTTGAAGAAGCCACCGACACGATACTCTTCTGCAGCTCCATCGTCCACGACCTGGCTTACCGAGCAGCAACAATAGCCATCGAA AAGGAACTCTCGGTCCCACTAGATGATTCTCGGCCAACAGTTACAATCCTAGGGAAGTCCACCCCGGACAGGAAGGAAGCCCGGGGAAGAACCAAGCGAG GAGGCTCGAAATCCTCGAAAGTGAAGCAGAAACAACTCGAATCCGCCACCAAGAGCCCCGCAAGCAAGCTAGAGAACAACGAGAACGACGAGAATAATGC CAACGACGACCTCACGGTTCGGAACGTGGGTCTCCCTCCTTCTCTTGATCATAACAATAAGATGGATAGCTCGAAGCCTCCAAAGCTTGAATCCAAGTGC AATTGCACAATAATGTGA
AA sequence Show only first row Show all	>Lus10011374 pacid=23159222 polypeptide=Lus10011374 locus=Lus10011374.g ID=Lus10011374.BGIv1.0 annot-version=v1.0 MPPSPGLRFSPGREAKAGGGAGDNHKRGRSLEGGILFKEKDDDLALFNEMQSREKEDFLLQSTDDFEDSFSTKLRYFSDLKLGISVAGRGECSGMLNAEG EKNDYDWLITPPETPLFPSLDDEPVPASLPARGRPRSQPISISRSSTMEKSYRSSRGSASPNRSSLSPRSGSSTLQSRGRPSSSTRNSSPTPSQRPATPS RRPSTPPSKASPSGPRSSTPTPRRASTGGSGQRGVSPVRSTGGNSVSPKVKAWQSTIPGFSSEAPPNLRTSLGDRPASYVRGSSPASRNGRQSMSPIASR SASSSHSQDRDRTSSYSKGSVASSGDDDVDSLQSVHVGSLDRSRGVGGFSNNRTSALPKKPARVFSPSSAPKRSFDSAIRQMDHRKSPQNMFRPLLSSVP STTFYAGKGSSAQRSLVSMTSSVTTSSNASSDQGASLAPDTNGNDHHHDITTIETGYSSVREDIFAFDKADDLNEDCIVDVVPQSRSQLQVPDKDSLTKS EPEDSGEFSQQDVGGEISSASDAMFVRDSSCSLGIKICSRCGCKYRDVEAMEKTDINLCEDCSKQDSVVSCNALETVTAENPLQLSIIKAEESKQIDESK LIIDVPELQSQMENVVYSSDALSHEPSLMHPQEGSVAPSAEDGKEHTMTDKKGFTEPALVRSVSDIVTGTLQLPNYNEGAGISVVLRKSSSIKGHVFQGR SFTASSVSYDDVSFTRDSANSLRSSIGHGSTSGSSSVDLYSARQMEAARIQRQLSGSKKGDLDSARPLSRGSSFSGSVNLGHQVAGLGTSTVEARDEVGG SVVINSENNEVDGSKMSSAGPVIPDEYICERSDSSRTMELEEHSALPPTSNEEAYQNDAVNPSDTDAASPLESSLEAKNKAEVPGHSRLASISEIEAEDH RLSHRRSESIDLSANLRIMADEIEDPSISAPSDKDATTPILENNTSDRERGVLDESTVMVECSGGNKARSLTLEEATDTILFCSSIVHDLAYRAATIAIE KELSVPLDDSRPTVTILGKSTPDRKEARGRTKRGGSKSSKVKQKQLESATKSPASKLENNENDENNANDDLTVRNVGLPPSLDHNNKMDSSKPPKLESKC NCTIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10011374 [exp]	0	1
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	1.7	0.8833
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	2.2	0.9069
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	3.5	0.8945
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	7.1	0.8729
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	8.9	0.8596
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	9.2	0.8681
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	9.5	0.8701
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	10.2	0.8745
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	10.2	0.8674
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	13.0	0.8524

Compare expression of checked genes

Lus10011374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.