Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26000 75 / 2e-16 Ribonuclease inhibitor (.1) AT2G01620 51 / 4e-08 MEE11 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) AT3G27290 49 / 3e-07 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006438 [exp] 143 / 7e-41 AT3G26000 240 / 1e-73 Ribonuclease inhibitor (.1) Lus10037060 [exp] 100 / 3e-25 AT3G26000 337 / 6e-112 Ribonuclease inhibitor (.1) Lus10007930 [exp] 45 / 4e-06 AT2G01620 195 / 9e-61 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Lus10013466 [exp] 39 / 0.0008 AT2G01620 174 / 6e-53 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054600 [exp] 92 / 3e-22 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1) Potri.008G179800 [exp] 87 / 1e-20 AT3G26000 330 / 1e-109 Ribonuclease inhibitor (.1) Potri.001G337300 [exp] 78 / 2e-17 AT3G26000 252 / 3e-79 Ribonuclease inhibitor (.1) Potri.010G108600 [exp] 60 / 4e-11 AT2G01620 209 / 8e-66 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Potri.008G133100 [exp] 56 / 9e-11 AT2G01620 68 / 2e-14 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011378 pacid=23159271 polypeptide=Lus10011378 locus=Lus10011378.g ID=Lus10011378.BGIv1.0 annot-version=v1.0 ATGGTTTGTACTTCGCTGCACTCTGCAGTTCGTGACAACCCTTCGTTATGGAGAAGTATTTACATTCATAAACCACTCAATGAGAAGATCACTGATGAAG TTCTTATCCAACTGACGGATAGGGCTCAAGGTAGTCTAGAGCAGTTGACGATGGTGGAGTGTCAATGGATCACTGATGCTGGACTGAAGCATCTAGCTAG CTGGTTTATAATCATGCCTTGGACATTGAAACTTGCCCGAAATTCCGCAACCACAAGTTGGTCTATGATTGTCCTGTGGAAAGCTACCAGCAATGGAAGA AGCATTCTGCTCAGGCTTGTAGAGCTTGCATTCTTTGCATACGGCGGTGTGCTGAGTGCGGTTGCTGTATCAACAACAGTGAATACGTCGAGACTTTTCT TCTCGAGCATCTGTGTGCATCTTGTGGAAGCGCCAGCTGAAGATGTAAAGATAAAAAACTGGTGA
AA sequence Show only first row Show all	>Lus10011378 pacid=23159271 polypeptide=Lus10011378 locus=Lus10011378.g ID=Lus10011378.BGIv1.0 annot-version=v1.0 MVCTSLHSAVRDNPSLWRSIYIHKPLNEKITDEVLIQLTDRAQGSLEQLTMVECQWITDAGLKHLASWFIIMPWTLKLARNSATTSWSMIVLWKATSNGR SILLRLVELAFFAYGGVLSAVAVSTTVNTSRLFFSSICVHLVEAPAEDVKIKNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26000			Ribonuclease inhibitor (.1)		Lus10011378 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	6.9	0.7960
					Lus10002735 [exp]	13.5	0.7125
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	13.6	0.7761
AT3G09590			CAP (Cysteine-rich secretory p...		Lus10009068 [exp]	16.4	0.7110
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002986 [exp]	17.0	0.7467
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	18.7	0.7136
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	19.6	0.7723
					Lus10039878 [exp]	21.1	0.7532
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10032438 [exp]	21.1	0.5985
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	24.2	0.7724

Compare expression of checked genes

Lus10011378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.