Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67680 689 / 0 SRP72 RNA-binding domain (.1) AT1G67650 645 / 0 SRP72 RNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006439 [exp] 1041 / 0 AT1G67680 783 / 0.0 SRP72 RNA-binding domain (.1) Lus10037059 [exp] 896 / 0 AT1G67680 759 / 0.0 SRP72 RNA-binding domain (.1) Lus10036924 [exp] 508 / 3e-175 AT1G67680 440 / 3e-149 SRP72 RNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216400 [exp] 783 / 0 AT1G67680 767 / 0.0 SRP72 RNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04733 [flax] [poplar] Coatomer_E Coatomer epsilon subunit CL0020 [flax] [poplar] PF08492 [flax] [poplar] SRP72 SRP72 RNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10011379 pacid=23159241 polypeptide=Lus10011379 locus=Lus10011379.g ID=Lus10011379.BGIv1.0 annot-version=v1.0 ATGGCTCCAAAGCCGAAGGCGAAGCCTTCACCGGCGTCATCGCAGCCGCCGCCTGCTATCGAAGATCTGTTCACGAAACTCAATTCACACATCGAGGGAT CTAGCGATCCGAGCATCGAGCAATCGGAGCTGGAAAAGGCTGTCAGATTCGCTGACCAAGTTCTATCGATTGCTCCTGGAGATGAAGACGCCATCCGATG CAAAGTTGTGGCATTGATTAAGAACGACAGTTATGACGATGCTCTTTCTTCGATTCGTGCTGCGTCCAAGCTTCAGCTTGATTTCAGTTTCGAACAGGCG TATTGTTTATACAAGCAAAACAAACTGGATGAAGCACTGGAGTTGCTGAAAGGGCAGGAGAGTAATGATGAGACGATGTTGTTAGAAGCTCAGATTCTTT TCCGTCTAGGGAGAATGGATGCTTGTATCGAAGTCTACCAAAAGCTTCGGAAGTCCAAGCTCGACTCTTTGGAGATTAATCTCGCTGCAAGTTTGATTTT AGCTGGGAGGTCGTCTGAAGTGCAAGGCATGCTGGAGGCACAGCGAATCAAACCATCGAGCAGCTATGACTTGGCATTCAACACTGCTTGCTCGTTGATT GAAGTGAAGAAGTATGCAGAAGCTGAACAATTATTGCAGGAAGCTAGAAGGATTGGTCAGGAGTCGTTGCTGGATTCGAACTGGGCCGAGGAGGACATAG AAATTGAATTGGCTCCAATAGCTGTGCAGCTGGCATATGTTTCGCAGCTTCTAGGCAGATCACAGGAAGCCATGGAAGCTTATGCAGAGATTATTAGTCC AAATTTGGCAGACGACTTGTCATCTCTCGCCGTGGCTGCTAATAACCTTGTTGCTGTAAGGGGTCCAAAAGAAGTGTCTGATAGCCTGAAGAAACTTGAT CTCCTAAAGGAACAGGGTGCAGCTGATTACTGGCTTGCTCGAGGACTCGACAAGCTTTCTCAAAAGCAAAGGGAGACTATATATACAAATAGAGTGCTCC TACTTCTCCACGCAAATAAGATGGATCAGGCTCGAGAACTCGTTTCTGCATTACCAGAGATATTTGCTGACAGTGAGATGCCTGTACTGCTTCAAGCTGC AGTGTTGGTCAGGGAGAAGAAGGCCGCTAAAGCGGAAGAAATCCTCGATAACTGTGCTGCAAAGTTCCCTGATAAGTCCAAGATCGCTCTTCTCACGAGA GCACAAATTGCTGCTGCCTCTGGTCACCATCAGATCGCTTCCGACTCCCTCTCGAGGGTACCTGACATCCAACACATGCCTGCCACCGTCGCCACCCTAG TGGCATTGAAAGAGCGCGCTGGAGACATTGATGGTGCATCAGCAGTCCTCGACTCAGCAGTGAAGTGGTGGTCGAACGCCATGACTGATGAAGACAGCAA GCTGAACATCATAATGCAGGAGGCTGCTTCGTTCAAGGTGAGGCACGGTCGGGGAGAGGAAGCTGCTCGTCTCTACGAGGAGCTCGTACGAACCCACGAG AGTGTCGATGCTATAGTCGGCCTAGTCAGCACCATAGCCCGTGTCGACATTGACAAGGCGGAACTTTACAAGAAGAAGCTGAATCCCTTACCCGGTCTGA AATCAATCGATGTCGATAGTCTCGAGAAGACATCCGGTGCTAAGCACGTCGAGGGCGCCTCGTTACGTGAACTGGCATCACTCAACGCCGAGGAAGGGAA GAAGGAGAAGCAAAAAAAGAAGAGGAAGAGGAAGCCAAAGTACCGGAAAGGGTTTGACCCAGCGAATCCTGGACCTCCTCCGGACCCCGAGAGGTGGCTC CCGAAGAGGGAGAGATCGAGTTACAGACCGAAGAGGAAGGACAAGAGAGCAGCTCAAGTAAGAGGGTCTCAGGGTGCCGTCTCTAGGGACAAGAATGAAG CCTCTGCTGCTTCCTCTACTGCTGCTACTACGAGCTCCAACGCTTCGAAAGCAGCGAAATCGGCGTCGCAGAATGCTGGTCCGTCGAGTTCGAAACAGTC TTCGAAGTCGTCAAAGAAGAAGTCGAGGAGGTGA
AA sequence Show only first row Show all	>Lus10011379 pacid=23159241 polypeptide=Lus10011379 locus=Lus10011379.g ID=Lus10011379.BGIv1.0 annot-version=v1.0 MAPKPKAKPSPASSQPPPAIEDLFTKLNSHIEGSSDPSIEQSELEKAVRFADQVLSIAPGDEDAIRCKVVALIKNDSYDDALSSIRAASKLQLDFSFEQA YCLYKQNKLDEALELLKGQESNDETMLLEAQILFRLGRMDACIEVYQKLRKSKLDSLEINLAASLILAGRSSEVQGMLEAQRIKPSSSYDLAFNTACSLI EVKKYAEAEQLLQEARRIGQESLLDSNWAEEDIEIELAPIAVQLAYVSQLLGRSQEAMEAYAEIISPNLADDLSSLAVAANNLVAVRGPKEVSDSLKKLD LLKEQGAADYWLARGLDKLSQKQRETIYTNRVLLLLHANKMDQARELVSALPEIFADSEMPVLLQAAVLVREKKAAKAEEILDNCAAKFPDKSKIALLTR AQIAAASGHHQIASDSLSRVPDIQHMPATVATLVALKERAGDIDGASAVLDSAVKWWSNAMTDEDSKLNIIMQEAASFKVRHGRGEEAARLYEELVRTHE SVDAIVGLVSTIARVDIDKAELYKKKLNPLPGLKSIDVDSLEKTSGAKHVEGASLRELASLNAEEGKKEKQKKKRKRKPKYRKGFDPANPGPPPDPERWL PKRERSSYRPKRKDKRAAQVRGSQGAVSRDKNEASAASSTAATTSSNASKAAKSASQNAGPSSSKQSSKSSKKKSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	0	1
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	2.8	0.8720
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Lus10023714 [exp]	5.8	0.8363
AT1G75990			PAM domain (PCI/PINT associate...		Lus10025072 [exp]	6.9	0.8241
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	8.4	0.8225
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	12.6	0.8310
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	14.1	0.8183
AT5G57460			unknown protein		Lus10004736 [exp]	16.6	0.8273
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	19.3	0.7650
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10036776 [exp]	21.0	0.7981
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	21.0	0.8132

Compare expression of checked genes

Lus10011379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.