Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53910 61 / 5e-11 RING/U-box superfamily protein (.1) AT1G18770 58 / 5e-11 RING/U-box superfamily protein (.1) AT1G60360 59 / 2e-10 RING/U-box superfamily protein (.1) AT4G26400 59 / 3e-10 RING/U-box superfamily protein (.1.2) AT1G74620 57 / 5e-10 RING/U-box superfamily protein (.1) AT1G73760 57 / 1e-09 RING/U-box superfamily protein (.1) AT5G56340 57 / 2e-09 ATCRT1 RING/U-box superfamily protein (.1) AT1G18780 57 / 2e-09 RING/U-box superfamily protein (.1) AT5G54990 56 / 2e-09 RING/U-box superfamily protein (.1) AT1G18760 56 / 2e-09 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005237 [exp] 103 / 6e-27 AT1G14200 72 / 1e-15 RING/U-box superfamily protein (.1) Lus10002369 [exp] 59 / 1e-10 AT3G47990 252 / 1e-83 SUGAR-INSENSITIVE 3 (.1) Lus10042126 [exp] 59 / 5e-10 AT3G47990 399 / 6e-139 SUGAR-INSENSITIVE 3 (.1) Lus10010513 [exp] 58 / 7e-10 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 58 / 1e-09 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10011392 [exp] 57 / 1e-09 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10006449 [exp] 57 / 1e-09 AT4G26400 69 / 2e-13 RING/U-box superfamily protein (.1.2) Lus10025612 [exp] 57 / 2e-09 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 57 / 2e-09 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101700 [exp] 58 / 3e-10 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.015G074900 [exp] 58 / 5e-10 AT3G47990 506 / 0.0 SUGAR-INSENSITIVE 3 (.1) Potri.002G085800 [exp] 58 / 5e-10 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.002G083001 [exp] 57 / 5e-10 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G068700 [exp] 57 / 7e-10 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.013G116000 [exp] 57 / 1e-09 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 57 / 1e-09 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.012G053800 [exp] 57 / 1e-09 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G086500 [exp] 56 / 1e-09 AT4G05350 64 / 2e-12 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 56 / 2e-09 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10011380 pacid=23159194 polypeptide=Lus10011380 locus=Lus10011380.g ID=Lus10011380.BGIv1.0 annot-version=v1.0 ATGGCATTCCATTCAACATTATGCAGAGCTATAGCCACAGTCACCGGCGCCTGCGATCCCCCCGCCGGTCCGGTGACATCTAAAGCAACTAATTCCTCGC CGCACCTCTACGCCACAGTCATGTTCTTCAAGGTCGAAGCCCACTTTGTCATGCTCCCATACGGCAACCTCGAGCCAATCAAACGATTTAACCTCTCGAA GACTCCGACCACTTTTCCCGCCTTCTATCTAGGCAACCTAGAGAATATGGACACCCACATTCTCTCGTTGTTGAACCAGGTCGGAGTAACCGACCAGCCA CTCCAGGGCAGTGTGATCCAGTCCATTGCCAACCAGATTAGGGGAAAAGGTCGGATGCTAGAACCACGGACGTGGCTCGAATTGATTATAGTGTATGAGG ACGTGTACACATTTTTTTTTGAGATGAAGATGGTCGATTCGGCATGGGAGGAGGGCTGCCCGATATGCTTGGATGAATTCGTCACCCTAGGAAGTGTGCC GGACTTGCCTTGCGGGCATCACTTCCACATAAAGTGTATCGTGAATTGGCTGAAACGGAGCTATTCCTGTCCACTTTGTCGAACAACGTTGAATGTGGTG AATCCTCACCTCCAAATTGAAGGTGGATAA
AA sequence Show only first row Show all	>Lus10011380 pacid=23159194 polypeptide=Lus10011380 locus=Lus10011380.g ID=Lus10011380.BGIv1.0 annot-version=v1.0 MAFHSTLCRAIATVTGACDPPAGPVTSKATNSSPHLYATVMFFKVEAHFVMLPYGNLEPIKRFNLSKTPTTFPAFYLGNLENMDTHILSLLNQVGVTDQP LQGSVIQSIANQIRGKGRMLEPRTWLELIIVYEDVYTFFFEMKMVDSAWEEGCPICLDEFVTLGSVPDLPCGHHFHIKCIVNWLKRSYSCPLCRTTLNVV NPHLQIEGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	0	1
					Lus10006529 [exp]	1.4	1.0000
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	2.0	1.0000
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	2.4	1.0000
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	2.8	1.0000
					Lus10035557 [exp]	3.2	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004068 [exp]	5.1	0.9163
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039858 [exp]	5.5	0.8328
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	5.7	0.9969
					Lus10005297 [exp]	6.0	1.0000
					Lus10039034 [exp]	6.0	0.8927

Compare expression of checked genes

Lus10011380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.