Plant FIBer expression Database

Lus10011383 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67700 307 / 7e-107 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006442
[exp]
467 / 1e-169 AT1G67700 302 / 1e-104 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G053600
[exp]
321 / 4e-112 AT1G67700 316 / 4e-110 unknown protein
PFAM info
Representative CDS sequence
>Lus10011383 pacid=23159253 polypeptide=Lus10011383 locus=Lus10011383.g ID=Lus10011383.BGIv1.0 annot-version=v1.0
ATGGAGGTGGGCATGTCACTGAACGCGCTGGTGAGGCTGCCATTATCGACCTCAGCAAGAACTCAAGAAGAACATGGGCTGTTCAAGCTCAAGAACTCGC
CTTTCATGGCGCAGAGATGTAGTGGGCAAACTCGACGGAGCAAGTCATTGTTGGTAGTTGAAGCTAAGGGGAAGAGAGGGATGACGAATCGCCAGTTTCC
CAAGCCTCCTCTTTTGCCCAAGGTTGAAGACGATGGAAATCCCAAGTTCGTCATCTTCATCCGCATGGCCAATGTTAACATTTGGTACCCACTCAGCATC
ATTTCGGGCGGTACCACAGCCAAAATCATGGTTGCAGCAAAGGACAACTTCCTGGGCAAGTACATCTACAAAGACACCCTTGCCCGAAATCTTGCCACGC
TTATCTACAGAGACGAGAAGGAGATAAAGAAGACTGCAGTTAGGCAACATCGCATGTTGCGGTCAGCAACAGAGTTCAAATACGGTTACAAGCTCGTTGA
AAATGCAAACATACGAGCTGCCCTCTCGACAAACAACGTCATTGAGCTTCCAACGCAAGACAAGCTCAAAACAGTGGTTGACAAAGTAAGGGACTTCTTT
GGTGAGGCAAAGGAGTCTTTCGGGAAGTTCACATCGCTCGATTCGACTGCAGAGGCTGAAGAACCACAGAACGAAGTTGCAGAAGGACAGGAGAAAGCAA
AGTGA
AA sequence
>Lus10011383 pacid=23159253 polypeptide=Lus10011383 locus=Lus10011383.g ID=Lus10011383.BGIv1.0 annot-version=v1.0
MEVGMSLNALVRLPLSTSARTQEEHGLFKLKNSPFMAQRCSGQTRRSKSLLVVEAKGKRGMTNRQFPKPPLLPKVEDDGNPKFVIFIRMANVNIWYPLSI
ISGGTTAKIMVAAKDNFLGKYIYKDTLARNLATLIYRDEKEIKKTAVRQHRMLRSATEFKYGYKLVENANIRAALSTNNVIELPTQDKLKTVVDKVRDFF
GEAKESFGKFTSLDSTAEAEEPQNEVAEGQEKAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67700 unknown protein Lus10011383
[exp]
0 1
AT1G67700 unknown protein Lus10006442
[exp]
1.0 0.9896
AT4G02725 unknown protein Lus10006915
[exp]
2.8 0.9719
AT5G40950 RPL27 ribosomal protein large subuni... Lus10012538
[exp]
3.2 0.9714
AT2G26340 unknown protein Lus10000477
[exp]
3.7 0.9709
AT2G42220 Rhodanese/Cell cycle control p... Lus10023820
[exp]
4.2 0.9743
AT1G30380 PSAK photosystem I subunit K (.1) Lus10012086
[exp]
5.7 0.9719
AT5G22340 unknown protein Lus10043400
[exp]
7.3 0.9688
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Lus10002084
[exp]
8.1 0.9711
AT1G30380 PSAK photosystem I subunit K (.1) Lus10007399
[exp]
10.4 0.9683
AT2G20260 PSAE-2 photosystem I subunit E-2 (.1) Lus10011913
[exp]
10.6 0.9697

Lus10011383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.