Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27670 123 / 9e-35 HSP21 heat shock protein 21 (.1) AT4G25200 67 / 1e-13 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT5G51440 66 / 3e-13 HSP20-like chaperones superfamily protein (.1) AT1G52560 65 / 1e-12 HSP20-like chaperones superfamily protein (.1.2) AT1G07400 44 / 1e-05 HSP20-like chaperones superfamily protein (.1) AT5G12030 43 / 3e-05 AT-HSP17.6A heat shock protein 17.6A (.1) AT1G53540 42 / 6e-05 HSP20-like chaperones superfamily protein (.1) AT4G10250 42 / 0.0001 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G59860 41 / 0.0002 HSP20-like chaperones superfamily protein (.1) AT5G12020 40 / 0.0002 HSP17.6II 17.6 kDa class II heat shock protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006444 [exp] 335 / 4e-118 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10022322 [exp] 114 / 2e-31 AT4G27670 85 / 3e-20 heat shock protein 21 (.1) Lus10014876 [exp] 77 / 5e-18 AT4G27670 71 / 9e-16 heat shock protein 21 (.1) Lus10031154 [exp] 65 / 8e-13 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10031730 [exp] 62 / 3e-11 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10024225 [exp] 58 / 4e-10 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10023653 [exp] 57 / 7e-10 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10042408 [exp] 46 / 4e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026453 [exp] 46 / 4e-06 AT5G12020 170 / 8e-55 17.6 kDa class II heat shock protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053400 [exp] 203 / 4e-66 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.012G022400 [exp] 118 / 9e-33 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.003G109200 [exp] 65 / 1e-12 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.015G005801 [exp] 63 / 1e-12 AT4G27670 0 / 1 heat shock protein 21 (.1) Potri.001G192600 [exp] 63 / 8e-12 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.003G076000 [exp] 60 / 6e-11 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.010G175200 [exp] 49 / 2e-07 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1) Potri.006G223900 [exp] 45 / 4e-06 AT5G12020 154 / 8e-49 17.6 kDa class II heat shock protein (.1) Potri.009G021400 [exp] 43 / 4e-05 AT4G25200 108 / 3e-29 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.009G148000 [exp] 41 / 0.0002 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10011385 pacid=23159232 polypeptide=Lus10011385 locus=Lus10011385.g ID=Lus10011385.BGIv1.0 annot-version=v1.0 ATGTCTCAAGTCCTGTCAAACTTAAACCTTTCAATGTCCTTCACATCAAACAGAGTCTCAAAGCCATGGCTAAGCATGAAGAGTCCAGCAAGCTCCTCCA AGTTCTGCGCGAATGCCATGGCGCCAGGTGGAAGCAGGAGCAGCAACTTGGACCATTTGCAGAGAGCCAATAATATCAGTGGCAAGCAGCAACCCCGAAG GAAAGTTGCTTCCTCTGCTCCAATAGGGTTATGGGACAGGTTTCCAACGGCTAGAACAGTCCAGCAGATGATGGACACAATGGAGAGGCTCGTCGAAGAC GACCCATTTGCGGACGAAATCAGAGGTGGCCGGAGGTACAGAGCTCCGTGGGAGATCAAAGAAGGCGAAGCAGAGTACAAACTGAGATTCGACATGCCCG GGATGACCAAGCAAGACGCGAAGATCTGGGTCGAGGAGAAGATGCTAGTTGTGAAAGCTGAGAAGAAGAACAAAGAAGAAGAAGAGTGGAAGTATGGGAA ATATGGGTTTAGGATTGCTTTGCCTGAGAATGTTGAGTTTGAGAAGATTAAGGCCGAGGTTAGAGATGGGGTTCTATATTTGAGTATCCCCATGGCTAGT TCCAAGGCCAAGGTGTTTGATATTAGTGTTGATTGA
AA sequence Show only first row Show all	>Lus10011385 pacid=23159232 polypeptide=Lus10011385 locus=Lus10011385.g ID=Lus10011385.BGIv1.0 annot-version=v1.0 MSQVLSNLNLSMSFTSNRVSKPWLSMKSPASSSKFCANAMAPGGSRSSNLDHLQRANNISGKQQPRRKVASSAPIGLWDRFPTARTVQQMMDTMERLVED DPFADEIRGGRRYRAPWEIKEGEAEYKLRFDMPGMTKQDAKIWVEEKMLVVKAEKKNKEEEEWKYGKYGFRIALPENVEFEKIKAEVRDGVLYLSIPMAS SKAKVFDISVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10011385 [exp]	0	1
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10041615 [exp]	2.0	0.8903
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	7.2	0.8895
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	7.4	0.8238
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	8.1	0.8592
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	12.8	0.8315
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	16.6	0.8134
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	16.7	0.7908
AT3G10020			unknown protein		Lus10002842 [exp]	18.5	0.7927
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	21.6	0.7751
AT5G35320			unknown protein		Lus10027608 [exp]	21.7	0.7686

Compare expression of checked genes

Lus10011385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.