Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 726 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 705 / 0 EFR EF-TU receptor (.1) AT3G47580 687 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 678 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 437 / 5e-137 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 421 / 4e-129 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 393 / 2e-119 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 391 / 2e-118 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 389 / 1e-116 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 1770 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1379 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1319 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1269 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 1209 / 0 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1195 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1177 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1172 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1145 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 902 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 899 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 893 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 892 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 877 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 874 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 865 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 851 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 838 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 828 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011387 pacid=23159249 polypeptide=Lus10011387 locus=Lus10011387.g ID=Lus10011387.BGIv1.0 annot-version=v1.0 ATGAGTTTAGAGAGTTTGATCAGTGTGTATAATGTGGTAACATTACTTGTTCAACTGATGTGCCTTTGCAGTGTTGCTTCTTCCTCGGGCATTCTGTTGA GGAACGAGACCGATCGTCTCGCTTTGTTAGAGTTCAAGACCATGATTACTTCTGATCCTTTCGGGGTTTTGAATTCGTGGAATGATTCTGTTCATTTCTG CAAGTGGTATGGCGTGTCTTGTTCTAAAAGACATTATGGCAGAGTCACTGAGTTAAATCTGTCATCTCACGGACTCTCCGGCTCTATCTCGCCATACGTT GGCAATCTCAGCTTTCTGAAATATCTACGTCTCTACAACAACAGCATGGGTGGGGAAATACCTCCGGAAATCGGCCGCCTTAGCAAATTGCATCGGTTGT CGCTTCTCAACAACTCGTTTGATGGTAAGATCCCATCCAACATCTCAGAATGCTCTGCTCTTACTTTGTTCAGAGTAGATAATAATAAGCTGGTTGGAGA ACTACCATGGAAATTCGGTCAATTGAGCAAACTCCAATTGTTTGACGTAAGATCAAACAATCTTCACGGGAGCATCCCTCTCAGTTTTGGGAACTTGTCA TCTCTCCACGAGTTTCAAGTAGACGATAACCAATTAAGTGGGAGGATTCCGGCTACCCTAGGACGATTGAAGAGCATTCAGGTATTGTCTTTAGGGCTTA ATAACTTAGTTGGTGAAATCCCTTCTTCCATCTTCAATCTTTCTTCTCTCACGGAGCTGTGGTTTGGAAGTAATCAGCTTCATGGCATTCTTCCTTGGAA CCTTGGATTATTACTTCCAAATCTTCAGAATTTTGATGTGGCGTTTAACCGGTTTATTGGAAGTGTTCCACCTTCCTTATCCAATGCCTCCAATTTGGTT TTACTACAACTCCATAACAACAGTTTTATGGGAAACATGCCTAATATGGGATTCTCTAACAAGCTTACGCAGTTCAATATTTTTGGCAACTCTCTCGGAA GTGGGAAGGCTAATGATCTGAAATTCCTCTCTTCTTTGACCAATGCCACAAGTTTGGAAAGAGTGGATTTTGCGGGAAATAAATTTGGAGGGAGCTTACC GCAAGATATTGCCAACTTGTCAACCACTCTCAGGAAACTATCCTTTTATGACAACAAAATATCTGGAACTATTCCAAGTGGGATTCAATACCTAGTCAAC TTGGAAGTGCTTTGGGCAAATAATAATAATCTATCAGGTCAAATCCCATCCGATATTGGTCACTTAAAGTTTCTAAAGACGGTGTACTTATATGACAATA AGCTTTCAGGATACATTCCATCTTCAATAGGAAACTTAACCGAATTGCTTGAACTGAGTGTCAGCAATAACCATCTTGATGGTGAAATTCCTACATCTAT TCAGAATTGCCAGAGATTGTTATATTTGAACCTTGATAGCAACAGCCTTAGTGGCGTCATCCCTCCACAAGTCATGAGCCTGACCTCCTTATCAATTGGA CTAGGCTTGTCTAACAATCAATTCAGCGGTGCCATACCCATTGAAGTAGGGAACCTGAAAAACTTGAACAATTTCGATCTATCCCATAATATGTTGTCAG GCAACATCCCAAGTAGTTTGGGTGGTTGTATCAGTTTAGAGATTCTCTACTTGCAAGGAAATCGATTACAAGGGGTCATTCCTTCTTCTTTGAGTTCATT GAGAGGTCTTCAAGAACTGGATCTTTCTTCAAATATCTTATCGGGTCAAATTCCAAAATTCTTGGAACTCATGAATATCACGGGTCTTTTAAATTTATCG CATAACAATTTCGATGGTGAAGTGCCAACACACGGAATCTTCAAGAATACTAGCATAATTTCGGTCATTGGAAATGGCAAACTATGTGGGGGAATTGCTG CACTTAAACTTCCGCAATGTGACTTGACAATACCCTCAACCAAGAGATTGAGTCTCATGTGGAAAGTTGTTATATCAATAATTTCTAGTCTATTCTTTAT TGCCTTCATTGCTTCTGCCTTCTTTATCTTGTGGATTAAAAAAAGACGAAGACAAGATACAGTTTCAACGGATGATCCAAAATTACCGCAATTATCCTAC CAAATGCTCTTCAATGCTACTGATGGCTTCTCCTCAACAAATCAGATTGGTGCAGGCAGCTTTGGTACGGTGTACAATGGTGTCCTTGAGGATATTTCTG AAATGAGTATCAAAATTGCTGTGAAAGTATTCAACCTTCAACGTCGTGGCGCCTCCAAAAGTTTTATGGCAGAATGTGAAGCGTTGAAGAACATCAGACA CAAAAACCTTGTGAAAATAGTAACAGTATGTTCAAGTGTTGATCATGACGGGAATGATTTTAAGGCTCTCATCTATGAATTATTGGTCAATGGAAGCTTA GAAGACTGGCTCCATCGACCAATTGAAAGAATAGACGAGTCCACAACAAGGATCTTGAGTTTTATCCAGAGGCTAAATGTTGCTATTGATATAGCTTCTG CGGTGGATTACTTACACAACAATTGTGGAACTCCAATTGTTCATTGTGATCTCAAACCTAGTAATGTACTACTGGACGAGGATATGGTGGCTCATGTTGG CGATTTTGGATTGTCAAGATTCCTTTCAATAGTTGAGAATCCATCTTCAAGTACAATTGGTATAAAAGGAACAGTTGGTTATGCACCTCCAGAATATGGA ATGGGGAACAAAGTCTCGATACAAGGTGACATCTACAGTTATGGTATCCTTCTACTCGAATTATTTACCGGGAAAAGACCAACCGATGAGACTTTTAGAG ACGGCATAAGCCTTCATAGAATTGTCATGAGCGCTTTGTCGGAACAACACACATTCAAAGTTGTCGATCCGGTTCTACGCAACGAACTATTTCGTAGGTT GGCAACTCATCACAACAATACAAGTAGCAGCTTAGACGAAGCGAGAAAGGACCTAGAGGAGGTAATGCGTTCTATTCTCGAAATTGGCGTTGCTTGTTCT TTAGACATCCCAGAAGAGAGAATTAGTATGGACGAAGTTTTATCCAGAATTACCGTTGTAAAGAAAAAGATATATCCAGTTGATAGGAGGTAG
AA sequence Show only first row Show all	>Lus10011387 pacid=23159249 polypeptide=Lus10011387 locus=Lus10011387.g ID=Lus10011387.BGIv1.0 annot-version=v1.0 MSLESLISVYNVVTLLVQLMCLCSVASSSGILLRNETDRLALLEFKTMITSDPFGVLNSWNDSVHFCKWYGVSCSKRHYGRVTELNLSSHGLSGSISPYV GNLSFLKYLRLYNNSMGGEIPPEIGRLSKLHRLSLLNNSFDGKIPSNISECSALTLFRVDNNKLVGELPWKFGQLSKLQLFDVRSNNLHGSIPLSFGNLS SLHEFQVDDNQLSGRIPATLGRLKSIQVLSLGLNNLVGEIPSSIFNLSSLTELWFGSNQLHGILPWNLGLLLPNLQNFDVAFNRFIGSVPPSLSNASNLV LLQLHNNSFMGNMPNMGFSNKLTQFNIFGNSLGSGKANDLKFLSSLTNATSLERVDFAGNKFGGSLPQDIANLSTTLRKLSFYDNKISGTIPSGIQYLVN LEVLWANNNNLSGQIPSDIGHLKFLKTVYLYDNKLSGYIPSSIGNLTELLELSVSNNHLDGEIPTSIQNCQRLLYLNLDSNSLSGVIPPQVMSLTSLSIG LGLSNNQFSGAIPIEVGNLKNLNNFDLSHNMLSGNIPSSLGGCISLEILYLQGNRLQGVIPSSLSSLRGLQELDLSSNILSGQIPKFLELMNITGLLNLS HNNFDGEVPTHGIFKNTSIISVIGNGKLCGGIAALKLPQCDLTIPSTKRLSLMWKVVISIISSLFFIAFIASAFFILWIKKRRRQDTVSTDDPKLPQLSY QMLFNATDGFSSTNQIGAGSFGTVYNGVLEDISEMSIKIAVKVFNLQRRGASKSFMAECEALKNIRHKNLVKIVTVCSSVDHDGNDFKALIYELLVNGSL EDWLHRPIERIDESTTRILSFIQRLNVAIDIASAVDYLHNNCGTPIVHCDLKPSNVLLDEDMVAHVGDFGLSRFLSIVENPSSSTIGIKGTVGYAPPEYG MGNKVSIQGDIYSYGILLLELFTGKRPTDETFRDGISLHRIVMSALSEQHTFKVVDPVLRNELFRRLATHHNNTSSSLDEARKDLEEVMRSILEIGVACS LDIPEERISMDEVLSRITVVKKKIYPVDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	1.4	0.9421
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	2.0	0.9380
AT3G47570			Leucine-rich repeat protein ki...		Lus10011386 [exp]	2.2	0.9081
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	2.4	0.9248
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	3.5	0.9164
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	10.2	0.8544
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	11.3	0.8530
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	11.7	0.8779
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10030576 [exp]	12.1	0.8747
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	12.5	0.8595

Compare expression of checked genes

Lus10011387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.