Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 741 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 699 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 691 / 0 EFR EF-TU receptor (.1) AT3G47580 680 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 665 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 439 / 3e-136 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 415 / 7e-129 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 404 / 9e-123 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 393 / 2e-120 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17230 394 / 5e-120 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011387 [exp] 1506 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1453 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1361 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1304 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 1271 / 0 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1239 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1228 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1197 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1193 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 956 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 925 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 923 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 892 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 886 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 880 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 880 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 878 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 860 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 857 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011388 pacid=23159242 polypeptide=Lus10011388 locus=Lus10011388.g ID=Lus10011388.BGIv1.0 annot-version=v1.0 ATGAGTTCAGAGAGTTTGAGTGTATGTAATGTGGTTGCTGCAGCATTCCTTGTTCAGCTGTTGTGTCTTTGTCGCCATGCTTCTTCCTCTAGCATTCTGT TGAGCAATGAAACCGATCGGCTCGCTTTGTTGAGTTTCAAGTCCATGATTACTTCCGATCCTTTCGGGGCTTTGAGCTCGTGGAATGATTCTATCCATTT CTGCAAATGGTATGGCGTGTATTGTTCCAGAAGGCATTATGGCAGAGTCACTGCCTTGATCTTGCCATCTCAAAGACTCTCAGGCTCTATCTCAACGCAC GTTGGCAATCTCAGCTTCCTGGAATTTCTGGGTCTCCACAACAACAGCTTCGTTGGGGAAATACCTCAGGAAATTGGCCGCCTTCGCAGATTGCAGGACT TGGCACTTTTCAGAAACTCATTTGATGGTAAGATGCCATCCAACATCTCAAAATGCTCTGCTCTTAGAATGTTCGTTGTAGCTCAAAATAAGCTGGTGGG AGAAATACCATGGCAATACGGTCAGTTGAGCAAACTCGAGACTTTTAACGTGAGATTAACCAATCTTCACGGAAGCATCCCTCCCGCTTTTGGAAACTTG TCATCTCTTGAAGTGTTCAATGTAAACGAAAACCAACTACACGGTGAAATCCCTCCTTCCATCTTCAATCTTTCTTCTCTCAAGAGCATGTGGTTCGGAT TAAACCAATTTCACGGCAATATTCCATGGAACCTTGGATTATTACTTCCAAATCTTGAGGTTTTTGATGTGGGTGATAATCAGTTTACAGGTAGTGTTCC ACCTTCCTTATCGAATGCCTCCAATTTGGTTATACTGCAAATCAATGGCAACAATTTTACAGGAAGCATGCCAAGTATGGAAGTCTCTAGCAAACTTACA CGGTTTACTATTAGTAGAAACTCTCTTGGAAGTGGGAAGGCTAATGATCTGAAGTTTCTCTCTTCTTTGACCAATGTCACAAGTTTGGAATTCTTGCAAA TTCAGAGAAATAATTTTGGAGGTCACTTGCTGCAAGATATTGGCAACTGGTCAACCACCCGCCTCAAGTATCTATCCTTCCACGACAATAAAATATATGG AAATATTCCAAGTGGGATACAAAGCCTTATTAACTTGGAGGTGTTATCAGGATCTAACAATGATTTGTCAGGTACAATCCCATCCAGCATTGGTAATTTA AAGTCTTTAGCCATGTTGTTTTTGCTTAACAATAAACTTTCTGGAGACATTCCATCTTCGATAGGAAACCTGACAGAATTGCTTCACCTGAATATTAAGG GTAACAATATCTATGGAGAAATTCCCGCTTCTATTCAGAATTGGAAAAGATTGTTAAGTTTGAGCCTTTCTAACAACAACCTCAATGGCGTTATCTCTCC ACAAATCATGAGCTTTAGGTCGATACTTTCCCTAGACTTGTCTCACAATCAATTCACTGGGGGCCTTCCCATCGAGGTGGGAAACTTGAAAAGCTTGGGC AAATTGGATCTATCTCATAATGCGTTGTCAGGCAACATCCCAAGTAGTTTGGGTAGTTGTATCAACTTGGAGTATTTATACTTACAAGGCAATCGCCTAC AAGGTGTCATCCCTTCTTCTTTGAGTTCATTGAGAGGTATTCAAGAATTAGACCTTTCTGTCAATAATTTATCTGGTCAAATTCCAAAGTTTTTGGAGCT CATGAATATCTCAGGCTTCTTGAATTTGTCGTATAATAATTTTGAGGGTGAAATACCTACACAAGGAGTTTTCAAAAACAAGAGTATTGTTTCAGTCTCT GGAAATAGCAAGCTATGTGGGGGAATTGTTGCGCTTAAACTTCCACCATGTAACTTCACTATACACTCAACCAAGAGTTTGAGTCTTAAGTGGAAGATTG TTATATCGACAATTTCCAGTCTGCTCTTTCTTGCCTTCGTTGGATCTTGCTTCTTCATCTTGTTGGTTAAGAAAAGAGGAAGACAAGATGCCGTCTCAAC AGATGATCCAAAATTACTGCAATTATCCTACCAAATGCTCTTCAACGCTACTGATGGCTTCTCCTCAACAAATCAGATTGGTGCAGGCAGCTTTGGTACG GTGTACAAGGGTGTCCTTGAAGATATTTCTGAAATGAGTATCAAAATTGCTGTAAAAGTATTCAACCTTCAGCGTCGTGGCGCTTCCAAAAGTTTTATGG CAGAATGTGAAGTCTTGAAGAACATCAAACACAAAAACCTTGTGAAGATAGTAACAGTATGTTCAAGTGTTGATCATGACGGGAATGATTTTAAGGCTCT CATCTATGAATTATTGGTTAATGGAAGCTTAGAAGACTGGCTTCATCGACCAATTGAAAGAATAGACGAGTCCACAACAAGGATCTTGAGTTTTATCCAG AGGCTAAATGTTGCTATTGATATAGCTTCTGCGGTGGATTACTTACACAACAATTGTGGAACTCCAATTGTTCATTGTGATCTCAAGCCTAGTAATGTAC TACTCGACGAGGATATGGTGGCTCATGTTGGCGACTTTGGATTGGCAAGATTCCTTTCAATAGTTGAGAATCCATCTTCAAGTACAATTGGTATAAAAGG AACAGTTGGCTATGCACCTCCAGAATATGGAATGGGAAACGAAATCTCGATACAAGGTGACATCTACAGTTATGGTATCCTTTTACTCGAATTATTTATT GGGAAGAGACCAACTGATGAGTCCTTTAGAGACGGCTTAAGCCTTCATAACTTTGTCATGGGCGCTTTGTCGGAACAAGACACATTTGAAGTTGTGGATC CGGTTCTACTCAATGAACTACTTCAAGGGTTGACAACTCATCACAACTATACAAGTAGGAGCTTAGACGAAACGAGAAAGGACCTAGAAGAGCTAATGAG TTCCATTCTCGAAATCGGCATTACTTGTTCTTTAGACATCCCAGAAGAGAGAATTAGTATGGGCGAAGTTTTATCCGGGCTTACTGCTATAAAGAAAAAG CTTGTCCCGGTTGAAAGGAAGTAG
AA sequence Show only first row Show all	>Lus10011388 pacid=23159242 polypeptide=Lus10011388 locus=Lus10011388.g ID=Lus10011388.BGIv1.0 annot-version=v1.0 MSSESLSVCNVVAAAFLVQLLCLCRHASSSSILLSNETDRLALLSFKSMITSDPFGALSSWNDSIHFCKWYGVYCSRRHYGRVTALILPSQRLSGSISTH VGNLSFLEFLGLHNNSFVGEIPQEIGRLRRLQDLALFRNSFDGKMPSNISKCSALRMFVVAQNKLVGEIPWQYGQLSKLETFNVRLTNLHGSIPPAFGNL SSLEVFNVNENQLHGEIPPSIFNLSSLKSMWFGLNQFHGNIPWNLGLLLPNLEVFDVGDNQFTGSVPPSLSNASNLVILQINGNNFTGSMPSMEVSSKLT RFTISRNSLGSGKANDLKFLSSLTNVTSLEFLQIQRNNFGGHLLQDIGNWSTTRLKYLSFHDNKIYGNIPSGIQSLINLEVLSGSNNDLSGTIPSSIGNL KSLAMLFLLNNKLSGDIPSSIGNLTELLHLNIKGNNIYGEIPASIQNWKRLLSLSLSNNNLNGVISPQIMSFRSILSLDLSHNQFTGGLPIEVGNLKSLG KLDLSHNALSGNIPSSLGSCINLEYLYLQGNRLQGVIPSSLSSLRGIQELDLSVNNLSGQIPKFLELMNISGFLNLSYNNFEGEIPTQGVFKNKSIVSVS GNSKLCGGIVALKLPPCNFTIHSTKSLSLKWKIVISTISSLLFLAFVGSCFFILLVKKRGRQDAVSTDDPKLLQLSYQMLFNATDGFSSTNQIGAGSFGT VYKGVLEDISEMSIKIAVKVFNLQRRGASKSFMAECEVLKNIKHKNLVKIVTVCSSVDHDGNDFKALIYELLVNGSLEDWLHRPIERIDESTTRILSFIQ RLNVAIDIASAVDYLHNNCGTPIVHCDLKPSNVLLDEDMVAHVGDFGLARFLSIVENPSSSTIGIKGTVGYAPPEYGMGNEISIQGDIYSYGILLLELFI GKRPTDESFRDGLSLHNFVMGALSEQDTFEVVDPVLLNELLQGLTTHHNYTSRSLDETRKDLEELMSSILEIGITCSLDIPEERISMGEVLSGLTAIKKK LVPVERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	0	1
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	1.7	0.9321
AT5G53110			RING/U-box superfamily protein...		Lus10019018 [exp]	4.0	0.8472
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	6.5	0.8772
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	6.9	0.8939
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	7.3	0.8596
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	7.7	0.8701
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	8.5	0.8418
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	10.2	0.8544
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	10.4	0.8764
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030717 [exp]	11.3	0.7669

Compare expression of checked genes

Lus10011388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.