Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24440 314 / 6e-109 RING/U-box superfamily protein (.1) AT1G13195 296 / 8e-102 RING/U-box superfamily protein (.1.2) AT5G01520 199 / 9e-64 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT5G58787 198 / 2e-63 RING/U-box superfamily protein (.1.2) AT3G47160 195 / 2e-62 RING/U-box superfamily protein (.1.2) AT5G37250 44 / 4e-05 RING/U-box superfamily protein (.1) AT5G37230 43 / 6e-05 RING/U-box superfamily protein (.1) AT5G37270 43 / 6e-05 RING/U-box superfamily protein (.1) AT5G05130 43 / 0.0002 DNA/RNA helicase protein (.1) AT5G47610 41 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006448 [exp] 458 / 4e-166 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1) Lus10006253 [exp] 367 / 2e-129 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 362 / 1e-127 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10011390 [exp] 224 / 9e-74 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 223 / 6e-73 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 213 / 4e-69 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 207 / 7e-67 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 204 / 1e-65 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10001209 [exp] 200 / 3e-64 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052700 [exp] 345 / 2e-121 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.008G181300 [exp] 344 / 7e-121 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 326 / 2e-113 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.015G089800 [exp] 301 / 1e-103 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.004G041200 [exp] 213 / 2e-69 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.010G053000 [exp] 213 / 5e-69 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 212 / 5e-69 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 209 / 8e-68 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 207 / 5e-67 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 203 / 2e-65 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011391 pacid=23159231 polypeptide=Lus10011391 locus=Lus10011391.g ID=Lus10011391.BGIv1.0 annot-version=v1.0 ATGATGTATTTGCAGCTGGAAAGGTCCTCCTCTTACCAGGATTCCCTCAAAGCTCTGGAAGCTGATATCCACCATGCCAACACCTTGGCAGCTGAAATCC CTAGGGAGAAAGGTGGATTGCATCTCCAGATGAAGCTAATGTACAATCAATGGGCTCCCCTTTTCCTCTACTTGCTTCAGAGGATTGATTGCTCCTCTTG CATCTGTCTGGTTCCAAGATACCTTAATCTCTTCCACATCCTGGTATACAAGGTTCGAGCAGATGGAAGGCCGCGAATATCTTCTTATGGAAGGAAAGCA ACCATTAAGGAGTTCTACGGTGTCATTCTACCTTCTCTACAAAGGCTTCATAGCAGCTCGGAGGAACCGGAACCGGAACCGGAACTGGAGTCGAAACTGA ATGATGTTCGTTCAATCGGAGATCGTTATGAAGATGAATGTGGGATTTGCTTGGAGCCTTGCACCAAGATGGTTCTTCCCAGCTGCTATCATGCAATGTG CATCAAATGCTACCACAACTGGAACACGAGGTCAGAGTCATGTCCATTCTGCCGGGGAAGCTTGAAGAGGGTCAACTCGGAGGACCTATGGGTGCTTACT TGCGAAAAAGACGTGGTCGATACCAAACTGATCACTCGAGAAGACTTGTTGCGGTTCTATCTGTACATCAACAGCCTACCGAAAGAATACCCGGATGCGA TGTTCTTGGTATACTACGAGTACCTATTCTGA
AA sequence Show only first row Show all	>Lus10011391 pacid=23159231 polypeptide=Lus10011391 locus=Lus10011391.g ID=Lus10011391.BGIv1.0 annot-version=v1.0 MMYLQLERSSSYQDSLKALEADIHHANTLAAEIPREKGGLHLQMKLMYNQWAPLFLYLLQRIDCSSCICLVPRYLNLFHILVYKVRADGRPRISSYGRKA TIKEFYGVILPSLQRLHSSSEEPEPEPELESKLNDVRSIGDRYEDECGICLEPCTKMVLPSCYHAMCIKCYHNWNTRSESCPFCRGSLKRVNSEDLWVLT CEKDVVDTKLITREDLLRFYLYINSLPKEYPDAMFLVYYEYLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24440			RING/U-box superfamily protein...		Lus10011391 [exp]	0	1
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	16.1	0.9411
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	18.2	0.9364
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	20.0	0.9266
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	21.9	0.9392
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	34.2	0.9362
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	36.8	0.9336
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	37.5	0.9300
AT5G57510			unknown protein		Lus10028472 [exp]	40.1	0.9334
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	40.1	0.9320
AT3G17940			Galactose mutarotase-like supe...		Lus10005808 [exp]	47.2	0.9262

Compare expression of checked genes

Lus10011391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.