Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56340 51 / 3e-07 ATCRT1 RING/U-box superfamily protein (.1) AT3G13430 49 / 8e-07 RING/U-box superfamily protein (.1.2.3) AT4G26400 49 / 1e-06 RING/U-box superfamily protein (.1.2) AT5G59550 49 / 1e-06 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G46620 49 / 2e-06 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G58720 48 / 2e-06 RING/U-box superfamily protein (.1.2) AT5G60820 48 / 2e-06 RING/U-box superfamily protein (.1) AT1G14200 47 / 2e-06 RING/U-box superfamily protein (.1) AT3G55530 47 / 3e-06 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT4G12190 44 / 3e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006449 [exp] 111 / 1e-29 AT4G26400 69 / 2e-13 RING/U-box superfamily protein (.1.2) Lus10005237 [exp] 63 / 9e-12 AT1G14200 72 / 1e-15 RING/U-box superfamily protein (.1) Lus10002637 [exp] 53 / 7e-08 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 53 / 9e-08 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 53 / 9e-08 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10012819 [exp] 49 / 6e-07 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10018167 [exp] 49 / 7e-07 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10007628 [exp] 49 / 1e-06 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1) Lus10030464 [exp] 49 / 1e-06 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 51 / 1e-07 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G223200 [exp] 51 / 3e-07 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 50 / 3e-07 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G001500 [exp] 50 / 4e-07 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 49 / 7e-07 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 48 / 7e-07 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 49 / 9e-07 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 49 / 2e-06 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 48 / 2e-06 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.019G086601 [exp] 47 / 2e-06 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10011392 pacid=23159226 polypeptide=Lus10011392 locus=Lus10011392.g ID=Lus10011392.BGIv1.0 annot-version=v1.0 ATGGAGCAGCCTAACGACCCTTCGAATCCGACTCCTCCTCGAATCGACCCGACCCTCCACGCCACCGTAGGGTTCAAAGACATCCATCGACGCTTTGTCT GGCGAGACGGCAACTACATGCTCATCGATAGGCACGTTGTGGACGACCCCCAAGTCCATCCACCGTTCTGTGTGGGCACGCTCGCGCTGTACCAAACCCG GCCGGAGCAGGTCGCCCGCGAAGTTTACGGGTTGCTGACCCGACTCGGATGGACGGCGGAACAGGACCGACGTTTTCGTGTGTTCTGGGACCTGCCCCAC CGAGTCAGGGAATATAACCTAGCGCGCGAGGTTATAGATTTTGTTTTGGTTGTGTTCAGGGTGAACGACGTCCTATTGAACGGGAGGGAAGAAATCGAGT GGCTTATGGCCCAAGCAGAAGAGGAATTGAGTCGGGGTAACTACGGCATGGTGCCGGCAGCAGAGACGGCGATCGAGGAACTGCTGACGGAGGTGGAGGT CGGAGAGGGGGAAGAGATTTGCGTGGTTTGCTTGGAAGATTTGCCGGCGGCGGTACCGGCGGCGGAGATGCCTTGTCGGCATCAGTTTCACGAGGGGTGC ATAGTGAGTTGGTTGAAACAAAGCCATTACTGCCCGATTTGTCGATTCGAAATGCCGACGGAGGAGAAGATGGAGACGGAGACGGCCGATTCGTGGACTT ACGACGATGTCGAAGGAAGAGAAGAAAGAGAGATCAGCCCGGAGTGTTAG
AA sequence Show only first row Show all	>Lus10011392 pacid=23159226 polypeptide=Lus10011392 locus=Lus10011392.g ID=Lus10011392.BGIv1.0 annot-version=v1.0 MEQPNDPSNPTPPRIDPTLHATVGFKDIHRRFVWRDGNYMLIDRHVVDDPQVHPPFCVGTLALYQTRPEQVAREVYGLLTRLGWTAEQDRRFRVFWDLPH RVREYNLAREVIDFVLVVFRVNDVLLNGREEIEWLMAQAEEELSRGNYGMVPAAETAIEELLTEVEVGEGEEICVVCLEDLPAAVPAAEMPCRHQFHEGC IVSWLKQSHYCPICRFEMPTEEKMETETADSWTYDDVEGREEREISPEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10011392 [exp]	0	1
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	8.8	0.7159
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10002204 [exp]	20.5	0.6615
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	31.9	0.6564
AT3G20750	GATA	GATA29	GATA transcription factor 29 (...		Lus10042504 [exp]	59.2	0.6286
AT5G51910	TCP	TCP19	TCP family transcription facto...		Lus10002963 [exp]	70.5	0.5927
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	71.8	0.6224
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10005038 [exp]	78.6	0.6087
AT1G78190			Trm112p-like protein (.1)		Lus10024634 [exp]	87.5	0.5869
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10002741 [exp]	93.5	0.6087
AT2G27730			copper ion binding (.1)		Lus10004865 [exp]	100.7	0.6020

Compare expression of checked genes

Lus10011392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.