Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24460 375 / 8e-112 TNO1 TGN-localized SYP41 interacting protein, unknown protein AT4G31570 73 / 8e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006450 [exp] 1405 / 0 AT1G24460 902 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10036938 [exp] 777 / 0 AT1G24460 838 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10006252 [exp] 759 / 0 AT1G24460 937 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10026934 [exp] 70 / 8e-12 AT4G31570 680 / 0.0 unknown protein Lus10020133 [exp] 69 / 3e-11 AT4G31570 1315 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052600 [exp] 637 / 0 AT1G24460 1116 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Potri.018G008600 [exp] 75 / 2e-13 AT4G31570 1464 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011393 pacid=23159239 polypeptide=Lus10011393 locus=Lus10011393.g ID=Lus10011393.BGIv1.0 annot-version=v1.0 ATGTCCGGTGGCAGTAGCGACGGCGACGGCGGCGGAGAGAACATGCTATTGATCAACGGCGATGGGGAATTGAATGGAGGAGCTGAAATGGGTGAAACTC AAGCGACCTATCAGTTTCCGAGTGACAGCGAAATGCAGGAAGGAGAAGGAGATTCGGCTTTGATTCCTCACGTGGAGAGTAGGGAGGACATGTTTGTGGA TGCAAACGAGGATATTATTCAAGACAGCCAATTTCACGAGGCTGATAGCGAAGTTGACTCGAAGGACGAAGAAGAAGTTTCATCGTCAGTGGATGTTGAT GGTCTGGGAGAAGGGCTCGAGAAGGCGATATTGGAGAAAAAGAGTATCGAGAACGAGTTAAAGGAAGAAAAGGAGAGCTTTGCCAGAGAAGTTGAACAAT TTCGAGAAAGGCTCGAGAATGCTGTTTTCGCGAAAGAGAGTGTCGAGAAGGAGTTAAAGGAGGAAAGGGAGAGCTTTGCTAAGGAAGTTGGCGGCCTGTG GAAGCAGCTGAAAGATCTGACTAATGGACGGTTAGACGGTGGGGAAGAGGGAGAGGTGCGAACAGATGAGTCATTGCCGGAACTGATAAATGAATGTTCA CAGTTTGTTAAAGCTGCTTTAGAGCAGAGGCAGCAGGCTGATAGGACATTGAGTGAAATTCATCAACAGATTGAAGATCTGAATGCGAAAGTTCAAGGGA ATCAGAATGTCGAAGTTGCTGTCGACAGAATGATGTATTCGCTTAGTACGGTGGTGAATCCAGGGGAGTTGGTAGATTATTCTGTTCTTGGGAAAACGGA TTATGTCGAAAGATGTGCTTCTTTGTTGGCAGAGCAATATAGGTGGATTCTTCACGAGATTGATCAATTCAGGCATTCCGTAACAGAAGGAGGTTCGAAT GTGGATGTGCAGGGGGACTACACTTGGGGATCGATTTTTGCGACGGCCAAAGCTGAGTTCTTGGAGCTGAAGAGAAAAGAAATGGAAATGGTGGAAAAGC TAGCCAATATGGACGATCAAAATAGAAAATTGGTTGATGAAGTTGAGAAGGAAAAGACAGAGATGGAAAGGTTGAAGGCAGACCTTCAGCTCGAAAAGAA CAAGTGTACTAATGCCAAAGAAAAACTTAATATGGCCGTCACTAAGGGCAAGACGCTGATTCAAGTCCGTGATTCCCTGAAGCAGTCTCTAGCTGAGAAG GGCACCGAGCTCGAAAAGTGTTTGTCAGAATTGCAAGAGAAATCACATGCAGTTAAAGCGGCTGAACATTGTAAGGACGAATTAGTCAAATATGAAAATG CCGTCGCTGCATTGCAAGACTTGCTTTCTCAGAGGAATGCAATGGTCAAAAGCTTCGAAGATCTACAGCCTACGGATCTGGAAGGACAATTGAGGAGGAT TGTAAATCTGGTGGGTACTTTGCAGGAAAGTCTATTGCATAAGGCATCTGTTGTTGATAACATTGAAGAAATTCTTTCTCAGACCACTGTCCCGGAGGAA CTAAAATCGGAAGATGTTACTGTGAGACTGAAGTGGATTTTAGATTTGGTTGTATCAATCAATGAAACAGTTTCACTGAAGAACAACGTTCTCGAGGAAT TTGAAGAAACACTGACTCGAATAAGTATACCCGATGATGTTCAGTCAGAGGATTCAATTGGGAGGTTGAAATGGCTAGTTGAGGACAGGCATAAGATTAC AAACGATTTTCTTGAGTTCCAGAAAGCGAAAGATGCGTTAAGCCTTGTCGATATGCCAGAATCCGTCTCATCCTCCGATTTGGCAACTCAATTAGGTTGG CTTAAGGGATCGATTGATGAGATGAAGGGTGCAATCACCTCAGAAATTGAAGCGAAGGAACGTTTAAAGATGGAACTTGACGAACTATTGGGGAAGCATG AACAGATGGTTGAAAAAGAACGTGAAGCTTCCGCGAATATTTCTCATGACGATGCTGAGGTCTTTTGTCGAATGCAAAGTCTCTTGTACGTCAGGGATCA AGAGTTGACGCTCTGTAAGACGATTCTAGAAGAGGACGAGCTTGTGCGATTGCAATTGCGTAATCTATCAGAGTCCCTGCGTTCAGCAAGTAAGGATCTT GAAGCATTGCGGGAGGAAAAAGAATCTAGGGAAAGTGATCTCAACAGATCGGAGGAAAAAGCCGCCTTGCTAAGGGAGAAATTGACCTTGGCAGTTAAGA AGGGCAAAGGATTGGTGCAAGATAGAGAAAACCTGAAGCATGTTTTGGATGAAAAGAAGTCGGAAATCGAGAAATTGAATCTTGAGATAGACCGGTTATC GACGGATTTGGAGCAAGTACAGAAGTTGGAGGCTGATCTTGTTGCTGTGAAAGATCAACGAGATCAATTCGAGCAGTTATTACTCGAGAGCGATAGTATG CTGCAAAAAGTAATGGAGTGTGTTGACTGCATTACTCTTCCCATGGACTCAACTTCCGAAGAGCCCGTGGGTAAGATGAAGGCTCTTGCTGTCTATGGCT CGAAGGTCACTTGA
AA sequence Show only first row Show all	>Lus10011393 pacid=23159239 polypeptide=Lus10011393 locus=Lus10011393.g ID=Lus10011393.BGIv1.0 annot-version=v1.0 MSGGSSDGDGGGENMLLINGDGELNGGAEMGETQATYQFPSDSEMQEGEGDSALIPHVESREDMFVDANEDIIQDSQFHEADSEVDSKDEEEVSSSVDVD GLGEGLEKAILEKKSIENELKEEKESFAREVEQFRERLENAVFAKESVEKELKEERESFAKEVGGLWKQLKDLTNGRLDGGEEGEVRTDESLPELINECS QFVKAALEQRQQADRTLSEIHQQIEDLNAKVQGNQNVEVAVDRMMYSLSTVVNPGELVDYSVLGKTDYVERCASLLAEQYRWILHEIDQFRHSVTEGGSN VDVQGDYTWGSIFATAKAEFLELKRKEMEMVEKLANMDDQNRKLVDEVEKEKTEMERLKADLQLEKNKCTNAKEKLNMAVTKGKTLIQVRDSLKQSLAEK GTELEKCLSELQEKSHAVKAAEHCKDELVKYENAVAALQDLLSQRNAMVKSFEDLQPTDLEGQLRRIVNLVGTLQESLLHKASVVDNIEEILSQTTVPEE LKSEDVTVRLKWILDLVVSINETVSLKNNVLEEFEETLTRISIPDDVQSEDSIGRLKWLVEDRHKITNDFLEFQKAKDALSLVDMPESVSSSDLATQLGW LKGSIDEMKGAITSEIEAKERLKMELDELLGKHEQMVEKEREASANISHDDAEVFCRMQSLLYVRDQELTLCKTILEEDELVRLQLRNLSESLRSASKDL EALREEKESRESDLNRSEEKAALLREKLTLAVKKGKGLVQDRENLKHVLDEKKSEIEKLNLEIDRLSTDLEQVQKLEADLVAVKDQRDQFEQLLLESDSM LQKVMECVDCITLPMDSTSEEPVGKMKALAVYGSKVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011393 [exp]	0	1
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	1.4	0.9383
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	12.5	0.9026
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	12.8	0.9072
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	16.3	0.8982
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	18.3	0.9068
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	18.7	0.8866
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	21.2	0.8923
AT2G42700			unknown protein		Lus10033604 [exp]	22.6	0.8709
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10038725 [exp]	22.8	0.8497
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018619 [exp]	23.7	0.8975

Compare expression of checked genes

Lus10011393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.