Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24460 409 / 4e-124 TNO1 TGN-localized SYP41 interacting protein, unknown protein AT4G31570 55 / 3e-07 unknown protein AT5G41790 44 / 0.0007 CIP1 COP1-interactive protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006450 [exp] 1399 / 0 AT1G24460 902 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10006252 [exp] 872 / 0 AT1G24460 937 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10036938 [exp] 785 / 0 AT1G24460 838 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10026934 [exp] 95 / 2e-19 AT4G31570 680 / 0.0 unknown protein Lus10020133 [exp] 93 / 5e-19 AT4G31570 1315 / 0.0 unknown protein Lus10009250 [exp] 0 / 1 AT1G24460 80 / 1e-21 TGN-localized SYP41 interacting protein, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052600 [exp] 603 / 0 AT1G24460 1116 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Potri.018G008600 [exp] 106 / 3e-23 AT4G31570 1464 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011394 pacid=23159260 polypeptide=Lus10011394 locus=Lus10011394.g ID=Lus10011394.BGIv1.0 annot-version=v1.0 ATGAGTGACATATCCACACTTGAAGATGATAAGAGGATTGCTGAACAGGAAATATCGACGTTGAATCCTAAGTTGAGTGCTTGCATGGACGAGTTAGCTG GAACCAGTGGCAGCTTGGCTAGCAAATCCGTGGAGTTAATCGGTCATCTTACAGATCTTCATATGCTTACGAAGAACGATGGGCTGTTGCCTGTAATCAG ACAACATTTCGAGAAGCAATTTCGAGATTTGAGTGATATGGATGCCATACTCAGAGACATGAAGGACTGTTTTGCTAATGGAGATTCAGTGTTGCAGGAT GATTCGCAGGCAAGGAAAGCTTTCCCGTATGACACTGATGGCATTCTAAGTGGAGAAATGGAAAATGGAGACGTGAACTCAACTGATTTGGATAATGTGT CGTTGTACGTCAAGAAGTTTAGCGACAGCTTACAGATGAGAGACAAAATCCTGGCTGAGAATTTCAAAGGATTCTCGAGCTTCATGGAGGAGTTTGTTGA AGCTATGCTGTGCAGATTAAGGACGATGAAGGATGCTGTAATTGTTACTTTCGAGCAAATGGACTCCATGAAACAGAAGATGACGGACTTTGAAATCCAT AAAGAAGAACAAGATCGAGCGTTAGCCTTGCTTGACAAAGAGCATAAAGCTTTGCTCTCTGCTTGTATTAATGCCACAAGAGAACTGCAGCAGTTTGAAT GTGTAAACGGTCTCGAGCTTGAAAAGCTTGACCATTTGATTCCATCAGTTAATGAGAGGACCGGCATCGAGGACAGTGAAAACGTCAAGATAGCCGAAAA GTTGGCATTGGCTACAAGAAAGGTGAAAAACTATATCAAATCGTTCGACAGTACGACCAAAGTGGCAGCTACCGTGATTGCTGATTTAGAGAAAAGATTG ACCGTCAGTGTGGGGAGTTCTGAGGGCATCCAAAGAGAAAGAGATTCGTTACAAAGTAGGGTTTTGGAGTTGGAGACTGATGTAGATGCACTGCGAATTT CGTGCCAGCAGCTAAGGAATGAACTAGGAGACCGCGAAAGCATCCTGAAAGAAAGGGACCTGCTTCAGAGTAGAGCTGTAGAATTGGAGGGTGATTTAGA AGCATCCCAAAATGAAAGGGATGTACTTAAAACCAGGGTTGCGGAGTTGGAAGACGAGATAGAAGCATCACGAAATTCATTCCACCAGCTGAGCTCGAAA CTAGTAGACTTGGAAAGCGTCCAACAAGAAAGGGATCTATTCCAGAGTAGGTTTGCAGAGTTGGAAGCTAAGCTAGAGGACTATGATAACTTGGAGAAGA AGTTACTGATGAAAGAACAGGAAGCTACAGATCCTCTTATGTCAACTTCAGAGTTGAAAACTCTTTTCGAAAAAATAAGTAGGGTGGACGTTTTTAATTT AGATGCAGAAGTAGGAACAGCTGGATCACAAAGTTCAGTTGATGTAGATAAACTATTTTACATAGTTGATAGCTTGCCACAGTTACAGAATCACATAAAT GTATTAGCTTCAGAGAAAGATCAGCTGCAGTCAACTGTATCAAGACAGATTCTCGAAATCGAACTTCTGAAGGATGATGTTCAAACACATTCCAGAAACC AACAAGATTTGGAGGCGAAGAAGGGTGAAATCTCTGAGATAACAGTTGGCTTGGTTAAAATAATCAATCTTTTGGGAGGTAATGAAGTTGTTGGAGATCA AAAGCCTACTAGTGCCGGGATGCTTCTGCCGCAATTGGAACAGGAGGTCAAGGCATTGTTCTCGGAAGCTGGAAATTCGAAGTCCCAGGCTCAGGAGCTT GGTAACAGGCTGTACGAGAGCCAAAAGGCCGTGGACGAATTGTCAACTAGGATCAGAATGCTCGAAGATTCACTTCAAAGTAGAAGTCCACAACCAGAGA TGTTCCCGGAAAGAAACATGTTTGAAGAGCCATCTCGTCCAAGTGGCTCAGAGATATCTGAAGTCGACGATGCTGGTTCTGTGGTGAAGACTGCTCTGCC TCCTGCTGCTGCTCATGTGAGAACTACAAGAAAAGGATCAACGGACCATCTAGCGATTAGCATCGACTCAGAATCTTCCACCCTTATCAACAGAGACGAA ACAGATGAGGACAAAGGTCGCTCATTTAGGTCTCTCAACACATCAGGCCTCGTCCCAACACAAGGGAAGTCTCTTGCGGATCGAGTAGACGGATTATGGG TATCGGGCGGTAGGGTTTTGATGAGCCGTCCAAGAGCAAGACTTGGCCTGATAGGCTATTGGCTTCTCTTACACATATGGTTATTGGCCACCATATGGTT ATTGGCCACCATTTTATAG
AA sequence Show only first row Show all	>Lus10011394 pacid=23159260 polypeptide=Lus10011394 locus=Lus10011394.g ID=Lus10011394.BGIv1.0 annot-version=v1.0 MSDISTLEDDKRIAEQEISTLNPKLSACMDELAGTSGSLASKSVELIGHLTDLHMLTKNDGLLPVIRQHFEKQFRDLSDMDAILRDMKDCFANGDSVLQD DSQARKAFPYDTDGILSGEMENGDVNSTDLDNVSLYVKKFSDSLQMRDKILAENFKGFSSFMEEFVEAMLCRLRTMKDAVIVTFEQMDSMKQKMTDFEIH KEEQDRALALLDKEHKALLSACINATRELQQFECVNGLELEKLDHLIPSVNERTGIEDSENVKIAEKLALATRKVKNYIKSFDSTTKVAATVIADLEKRL TVSVGSSEGIQRERDSLQSRVLELETDVDALRISCQQLRNELGDRESILKERDLLQSRAVELEGDLEASQNERDVLKTRVAELEDEIEASRNSFHQLSSK LVDLESVQQERDLFQSRFAELEAKLEDYDNLEKKLLMKEQEATDPLMSTSELKTLFEKISRVDVFNLDAEVGTAGSQSSVDVDKLFYIVDSLPQLQNHIN VLASEKDQLQSTVSRQILEIELLKDDVQTHSRNQQDLEAKKGEISEITVGLVKIINLLGGNEVVGDQKPTSAGMLLPQLEQEVKALFSEAGNSKSQAQEL GNRLYESQKAVDELSTRIRMLEDSLQSRSPQPEMFPERNMFEEPSRPSGSEISEVDDAGSVVKTALPPAAAHVRTTRKGSTDHLAISIDSESSTLINRDE TDEDKGRSFRSLNTSGLVPTQGKSLADRVDGLWVSGGRVLMSRPRARLGLIGYWLLLHIWLLATIWLLATIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011394 [exp]	0	1
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006450 [exp]	10.7	0.6643
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	16.7	0.6926
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	16.9	0.6933
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	29.9	0.6645
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	30.4	0.6304
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001842 [exp]	52.9	0.6040
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	82.4	0.5963
AT4G03000			RING/U-box superfamily protein...		Lus10041246 [exp]	84.0	0.6036
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10008553 [exp]	91.0	0.5987
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	92.0	0.5848

Compare expression of checked genes

Lus10011394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.