Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26090 601 / 0 ATRGS1, RGS1 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1) AT5G40645 50 / 8e-08 RPM1-interacting protein 4 (RIN4) family protein (.1) AT2G04410 49 / 2e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT2G17660 48 / 3e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT4G35655 48 / 4e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G55850 48 / 7e-07 NOI RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) AT5G63270 45 / 4e-06 RPM1-interacting protein 4 (RIN4) family protein (.1) AT3G25070 47 / 9e-06 RIN4 RPM1 interacting protein 4 (.1) AT3G48450 43 / 3e-05 RPM1-interacting protein 4 (RIN4) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006452 [exp] 898 / 0 AT3G26090 627 / 0.0 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1) Lus10006451 [exp] 153 / 1e-43 AT3G25070 46 / 2e-07 RPM1 interacting protein 4 (.1) Lus10036939 [exp] 78 / 3e-17 AT3G25070 52 / 7e-10 RPM1 interacting protein 4 (.1) Lus10006250 [exp] 78 / 3e-17 AT5G55850 52 / 7e-10 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10006361 [exp] 52 / 2e-08 AT5G55850 73 / 7e-19 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10012316 [exp] 52 / 3e-08 AT5G55850 87 / 4e-24 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10025949 [exp] 49 / 3e-07 AT2G17660 87 / 2e-24 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10016623 [exp] 48 / 5e-07 AT2G04410 105 / 1e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10022524 [exp] 48 / 5e-07 AT2G04410 104 / 2e-31 RPM1-interacting protein 4 (RIN4) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181500 [exp] 663 / 0 AT3G26090 578 / 0.0 REGULATOR OF G-PROTEIN SIGNALING 1, G-protein coupled receptors;GTPase activators (.1) Potri.015G089201 [exp] 49 / 2e-07 AT2G04410 90 / 1e-25 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.001G368900 [exp] 48 / 5e-07 AT5G55850 124 / 4e-39 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.001G338500 [exp] 47 / 7e-07 AT5G40645 82 / 1e-22 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.012G092601 [exp] 46 / 4e-06 AT2G04410 78 / 3e-20 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.014G168900 [exp] 45 / 4e-06 AT2G04410 102 / 1e-30 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.002G245400 [exp] 49 / 5e-06 AT3G25070 169 / 3e-52 RPM1 interacting protein 4 (.1) Potri.011G094200 [exp] 46 / 6e-06 AT5G55850 123 / 8e-38 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.011G022000 [exp] 45 / 6e-05 AT3G25070 74 / 6e-16 RPM1 interacting protein 4 (.1) Potri.004G002500 [exp] 45 / 6e-05 AT3G25070 75 / 1e-16 RPM1 interacting protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05627 [flax] [poplar] AvrRpt-cleavage Cleavage site for pathogenic type III effector avirulence factor Avr CL0272 [flax] [poplar] RGS PF00615 [flax] [poplar] RGS Regulator of G protein signaling domain
Representative CDS sequence Show only first row Show all	>Lus10011395 pacid=23159220 polypeptide=Lus10011395 locus=Lus10011395.g ID=Lus10011395.BGIv1.0 annot-version=v1.0 ATGCTAGAGAGGTTCGAGAAGAGGAGGAAGGAGCGGGAGAGGCTGAAGCAAGAGAAGAAGAGGAAGAAGAAGAAAGAGAAGAGAAACAACAACAGTAGGA GTAATAACAGTGATGGGAAATCATTGCCGAGGTTTGGAGAATGGAATGAGAGTGATCCATCGTCAGCAGACGGTTACAGTGCCATATTCGACGTTATCCG GAAAGAGAAGAACAGCAACACCAGTAATGTGCCTTGTGCTGGCAATCTCACCTCCAAGCTCAAGGAGCAGATCAAAACCAGAAGGAGAAGCAGGCTCAAA CTTTTCATCAAATCCTTGAAGATAAAGAACCAACCATTGTTCGAAATCTCTTTCTTCCTCGTTTATATGCCAATGCCCGCTCTCGGCAATCATTGTGTTG TTTTCAACTGCTCGAAGTTGAAGAACAATAACAAAAGGGTATCATCAAATGCAATTGAAGAAATGGCGAGCTCGAACAGCTGTGCGATACAAGGAGGATG CCCCACCGATTACATTGCTATCGCCATTGCCATTCTCTCCCTGATGCTGCTTGTTTCGAAATCGGTTGTTCCCTGCTTGGTACACAGTGTTCCAAGAACC AACGGTAGTGGTTTCTGGTTCCCTGTGATTCAACTCTTTGGCAGTTTCAACCTCTTGTTATCACTTGTGATGTCAGTTAACTTCTTGAAGCTAGAAAAGA ATCATTGGTGGTCTTCCTGCTATCTATGGGGAGTCTGGTTCGAAGGTCCCTTAGGATTCGGTTTGATACTTAGCTGTCGTATTGCTCAAGCGTTTCAACT CTACTTCATATTTGTCAAGAGGAGATTATCGCCTTTGAAATCTTATGTCTTCCTTCCACTGGTTCTGTTGCCATGGATTGCGGGAGCTGCATATATTCAT ACGAAGAAGGCAATGAACCATCGTTGCCACATAGGAACCCGGTGGATTGTCCCGGTTGCGTGCCTTCATACACTCTATGTTGTTGGCTTGCTTGGATGTA CCAGAGCAATAGGGCATATAGAGTTCAAGTTTGATGAACTCAAGGACCTTTGGCAAGGGATATTTGTCTCTTCATCTTCCATCGGAGCATGGGTGGCTGC TTATATACTGAACGAAGTTCACGACAATGTCTTGTGGCTTCAAGTAGTGTCAAGATTCATGCTTCTTGTTACGGCAAGCGTTCTTGTGCTGGCTTTCTTC TCTATGTCGATTTCGGAACCTTTGCATTCGCAAATCAGCTTAAGGAGAAGGGAACCTTCGGAGTTTCAAACAATGGGACAGGCACTTGGCATACCAGATA GCGGACTTCTCGTACAAAGAGATACAGCAGGACCAGCAGCCATTGATCCTGCCGAAACACTCGATAAACTTCTTCAGGACAAAAGGTTCCGCCATTCTTT TATGGCATTCGCGGACAGTTGTTTAGCCGGAGAAAGCGTGCATTTCTACAACGAAGTACACGAACTCGGTAAACTTCCCATTGACGACCCTGTGAGAAGG ATTTACATGGCTCGCCACATTATCGAGAAGTACATAGTTGCAGGTGCATTAATGGAGGTGAACATTTCTCACAGAACTCGACAACAGATACTGACGACGA CCAATCTGGCACACAGTGATCTCTTCACTTCTGCACTGAATGAACTGATGCAGCTTATGAAAACGAACCTGGCAAGAGATTACTGGTCATCCATTTATTA CCTCAAGTTCAAAGATGAAGCAAGTGCTTGGTCAAGTAGCTTCGAGATCGACGAAATCGGCCATGGCGATGGTTGTGGTAGCTTCTCTCCTCGATTGAGC TCGGTTCATGGCGCTGCTGACGATCCCTTCCACCATCAAGAACACCTTGTTAAAGGGTATGACTGCAATAGTTGA
AA sequence Show only first row Show all	>Lus10011395 pacid=23159220 polypeptide=Lus10011395 locus=Lus10011395.g ID=Lus10011395.BGIv1.0 annot-version=v1.0 MLERFEKRRKERERLKQEKKRKKKKEKRNNNSRSNNSDGKSLPRFGEWNESDPSSADGYSAIFDVIRKEKNSNTSNVPCAGNLTSKLKEQIKTRRRSRLK LFIKSLKIKNQPLFEISFFLVYMPMPALGNHCVVFNCSKLKNNNKRVSSNAIEEMASSNSCAIQGGCPTDYIAIAIAILSLMLLVSKSVVPCLVHSVPRT NGSGFWFPVIQLFGSFNLLLSLVMSVNFLKLEKNHWWSSCYLWGVWFEGPLGFGLILSCRIAQAFQLYFIFVKRRLSPLKSYVFLPLVLLPWIAGAAYIH TKKAMNHRCHIGTRWIVPVACLHTLYVVGLLGCTRAIGHIEFKFDELKDLWQGIFVSSSSIGAWVAAYILNEVHDNVLWLQVVSRFMLLVTASVLVLAFF SMSISEPLHSQISLRRREPSEFQTMGQALGIPDSGLLVQRDTAGPAAIDPAETLDKLLQDKRFRHSFMAFADSCLAGESVHFYNEVHELGKLPIDDPVRR IYMARHIIEKYIVAGALMEVNISHRTRQQILTTTNLAHSDLFTSALNELMQLMKTNLARDYWSSIYYLKFKDEASAWSSSFEIDEIGHGDGCGSFSPRLS SVHGAADDPFHHQEHLVKGYDCNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10011395 [exp]	0	1
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10033000 [exp]	1.4	0.9348
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10036164 [exp]	1.7	0.9158
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10006452 [exp]	2.2	0.9091
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	2.4	0.9162
AT5G54850			unknown protein		Lus10011150 [exp]	11.3	0.9155
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	13.0	0.8742
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10026041 [exp]	13.5	0.9052
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	16.1	0.9089
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	17.3	0.9010
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10021909 [exp]	17.7	0.8976

Compare expression of checked genes

Lus10011395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.