Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00930 80 / 8e-15 CIP4.1 COP1-interacting protein 4.1 (.1) AT5G37190 78 / 3e-14 CIP4 COP1-interacting protein 4 (.1) AT4G00920 72 / 4e-13 COP1-interacting protein-related (.1) AT1G55860 70 / 1e-11 UPL1 ubiquitin-protein ligase 1 (.1.2) AT2G02770 65 / 2e-10 4'-phosphopantetheinyl transferase superfamily (.1) AT2G01800 64 / 2e-10 COP1-interacting protein-related (.1.2.3) AT4G00580 62 / 9e-10 COP1-interacting protein-related (.1) AT1G30060 59 / 2e-09 COP1-interacting protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006453 [exp] 1656 / 0 AT5G37190 85 / 3e-16 COP1-interacting protein 4 (.1) Lus10000702 [exp] 238 / 5e-70 AT2G01800 54 / 4e-08 COP1-interacting protein-related (.1.2.3) Lus10004051 [exp] 72 / 6e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052200 [exp] 103 / 4e-22 AT4G00930 95 / 2e-19 COP1-interacting protein 4.1 (.1) Potri.007G102500 [exp] 64 / 2e-10 AT1G55860 95 / 2e-20 ubiquitin-protein ligase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011397 pacid=23159206 polypeptide=Lus10011397 locus=Lus10011397.g ID=Lus10011397.BGIv1.0 annot-version=v1.0 ATGGCCGAACTGGCGATTCCGACGGCCGGACATGGCGGCAGTGGAGCTTCCTTCATCAATACCCTTTTCATCGAAACTACGCTCGGCACTAACTTTGCCA TGCAGGTCTCTTCCTCCAACACCATCGCCGATGTCAAGAGGAGGATCATCGAAGAGCATCAAGTGTGTTTCCCCGAGTGTGGAGCGATAAGGGTTAATGG ATTGAAGGTGAAAAGGGAAGGGGTGTTCTTTCACTTGGCGGAGTCTATGCTTGTGGAGGGTGCATTTGATAGAAGTAATACAAGTTGGTGGTTCATCATC GTTGAAGCTTCTGTTGTTGTTTGTAAGGGTAAGGAAATCGTTGGGATTCAGAATTGTGAAGAGAAGGAAAAGTTGGCTTTAGTGAATGTTAAGAAGAATG TTTTTGAGAATGAGCCTTCTAGCTCATTGGATCAGAATGGCTCCCGTGGTGCTGATGATCTTGCTATTGAAGTTGTTGAGGCGGCTCAGCTTAGGGGTGG ATTTCATGGCGAAAAAGTTGCGTCCGTTGGAGTGGTTGTTGGTTCTGAGTCTCGTAGGGAGGAGAAGAGTGATGGACAAGCTCAGGATATGGAAATTCAA GCAACAAATACTAAGATTGATGGCAGCATGTTGCGAGTAAGAGATTTGGATCATCAGTTTGATGAACAAGATCGGGAGTTGGAAGTTCGAGTAATGGAAA ATAGGATGGATGGCAGCGTATTGAAGGGAGGAGATTTGAATGATGATTCCAATGCGAAGGAAACACATAAGAAGAGGAAGAGAATCGAAAACGCTTCAGC TGAGGGCCCTGAAGTTCAAGTGGAACATGGTGAACCTGCTATGGATGAATCCAAGAAGGATGATTTGGTCAGTGAGCGAAGTGATAAACCATCCATGGAA ACTTCCGAGCACGAGCCTGTTGCGAAGAGGCTCAAGACTGGAAAGGAGGAGATGGTAGATGAAGGGAGAGCCATGGTTCCAGAATCTACTGAAATGATTT TGGAGCCTTCTATGGTGTTTACACTACCTGCAGTTGTTGATGGGAAGATTAAAAGGAAGAAGAAGAAGAAGTCCAAGAAATTGGAGAAAAAAACCAATGC GGTTGATGAGATATCGCAAAAGGAAGCTAGAAGTGGCTGTGGAAATGTGGTTTCAGACCTGAATGATACGACTTCTGAGCTTCCTACAGTGTCTCAATTG CCTGTAGGAGATGAACAAAACCTCGTGAATGCTACTGTGGAAGGTTTAGATGCTGAAGCTAAGGAAAAAAGAAAGAATAAGTCCTCCAAGAAAAAAGATA AACAAGTCAATACCGTTGATGAGCAACAATCTATGAACAAAGCTCGAGGTGATGATGCAAATGTGGTTTCAGAACCGAATGATATGACTTGCGAGCCTCC TACAGTTTCTCAACTACCTATAGGAGATGAAGAACAACTCGTGAGTGCTACTGTGGGAGTTTCAGATGCTGGGGCAAAGAAATCCTCAGGGAAATCGGAT AAAGAAATTGATGCTGGTGGTGGGGTATCTCTGAAGGACGCTATAAATGACAATGTAAATGTGATTTCAGAATCGAATGATATGAATTGTGACCCTCCTA TTGTTTCCCAGCTACCTATAGAAGATGATCAACGACTTGTAAATGCTACCGTTGAAGGTTCAAAAGCCAAAGCTAACAAGAAAAGAAAAAAGAAGTCCAA GAAAGAAGTCAATGCTGTTGATGAGAAGTCTATGAACGAAGCTCAAGGTGGCAATGGAAATGTGGCTCCGGAACCGGATGCTGCTACTGTGGGAGCTCCA AATGCTGACACAAAGAAGAAGAAGAAAAAAAAGAAGTCCTCCAATAAAATGGAAAAAGAAGTCAATGCTGATGTTGACCAATCTCTGAAGGAAGCAAGAG GAGATGGCAATGGAAATATGGTTTCAGGACCGAATCATGCACCGGCTATCTTACAAAAGGAGGCAGATGAACACAAGTTGAACGACAAGGACACCGCTCC TGTCCAAGAGGCGGATCATAACAATTTTCCTTCACAAGATGTAAATGATTTTAAAAAACCAGTACCTGATGAGATGCATAGAGTTGCAACCGAAAAACCC ATCGCTACAGAAGTGGTGAAAGAAGTTCACTCTGAATTGCCTGAGGCTGTTCCATCTCTGGGTCTTTTTGCATTGAAAAAACGGAAGAAATCCAGAAAGC ATAAGGATTTATTGAGTGGCACACCAGTTACTTCAGAGTTAGGGTTTGTTAAGGACGCTGCCATTGATAACTCAATTCACGAAGCTGCTGAGAAGGGAAG TGATGTCCCTGCCAAGGATGGGAAAGAAGCAGTAGTAGCAGAAAGCCTCAAGGTGTCGCTTTTGGTTACTGATGAGGAAATCAATGAAGTTATCAAGAAT GTGATTGATTCTGTTCCCCAGGCCATGGAAACCAAAGCTGTGGCGGAAGTGAAAGAGCGGCAATCAAAGAAGAAATTAAAGAAGAAGCATGATTCAGATG CTAAGATCTCCCCACAGCCACAAGCAGAAGACGAGAACACTGGCGAAAATACTCCAGTCCCACTCACTGATGCAGTGAATACTCGTACCAGTAACTCGCT AGCTAAAGCAAGCAAGGTTGGTAATGATGCAGAAGAACTCAGCAAAAATAGTGGAGTCAACTTTATGGCTTATTTCTCACCTACTGAACAGGACAAGAAA ACTTCTGAACATAGTGAGATTACTGTTACAACGAAAGGTGAAAACAAAAGGAAAGTACAAGATAACGTGACACCCAAGTTACCTGAGGATCCTCCAATTT TGACAGGGAAACGTGGGTTTGAAGCAAACCCTCATGTTGGCAGCTCTGGCAAGGAGAACAAGCGTAATGAAGTCCAACAACATTCTGAAAGCTTTACAAA CTCGACCTCGAAACCTAAGAGAAGTAACAAGGTTCAGTCTTTAACCCAGAAAAAAGGCAATGTAAAGGGTGGGAGGAGAGGTTCTGATGCTAATACAGGG GAGGTTCTGAATGGCACTGCTCGTAAAAAACCGAGTTCAGTAATCAAAACAAATCTGTTTGGTGATGGCTCTGATGATACCCTTGAGACCTATGTGTTTC CATCTCAACTATCCAGCACTCCGGAGCCAGATTCCGATGTTTCGTCAGATCCAGATGGAGAAAGTGATGCAGGATTCGACGGTGAGACGAGAAATGCCAG TGGTGGTGGGGAAGGCATGAAGACGCCATTCCCACCAGGCGTTTCCCTGGGGACGATCCTGAAAAGTTCAAAGAGATTCAAGAACGCCAAGCTTGATGCA GAATCGCAGCCCGACGATTTCATCCCGATGAGCCCGAGCGTCAGCATATAG
AA sequence Show only first row Show all	>Lus10011397 pacid=23159206 polypeptide=Lus10011397 locus=Lus10011397.g ID=Lus10011397.BGIv1.0 annot-version=v1.0 MAELAIPTAGHGGSGASFINTLFIETTLGTNFAMQVSSSNTIADVKRRIIEEHQVCFPECGAIRVNGLKVKREGVFFHLAESMLVEGAFDRSNTSWWFII VEASVVVCKGKEIVGIQNCEEKEKLALVNVKKNVFENEPSSSLDQNGSRGADDLAIEVVEAAQLRGGFHGEKVASVGVVVGSESRREEKSDGQAQDMEIQ ATNTKIDGSMLRVRDLDHQFDEQDRELEVRVMENRMDGSVLKGGDLNDDSNAKETHKKRKRIENASAEGPEVQVEHGEPAMDESKKDDLVSERSDKPSME TSEHEPVAKRLKTGKEEMVDEGRAMVPESTEMILEPSMVFTLPAVVDGKIKRKKKKKSKKLEKKTNAVDEISQKEARSGCGNVVSDLNDTTSELPTVSQL PVGDEQNLVNATVEGLDAEAKEKRKNKSSKKKDKQVNTVDEQQSMNKARGDDANVVSEPNDMTCEPPTVSQLPIGDEEQLVSATVGVSDAGAKKSSGKSD KEIDAGGGVSLKDAINDNVNVISESNDMNCDPPIVSQLPIEDDQRLVNATVEGSKAKANKKRKKKSKKEVNAVDEKSMNEAQGGNGNVAPEPDAATVGAP NADTKKKKKKKKSSNKMEKEVNADVDQSLKEARGDGNGNMVSGPNHAPAILQKEADEHKLNDKDTAPVQEADHNNFPSQDVNDFKKPVPDEMHRVATEKP IATEVVKEVHSELPEAVPSLGLFALKKRKKSRKHKDLLSGTPVTSELGFVKDAAIDNSIHEAAEKGSDVPAKDGKEAVVAESLKVSLLVTDEEINEVIKN VIDSVPQAMETKAVAEVKERQSKKKLKKKHDSDAKISPQPQAEDENTGENTPVPLTDAVNTRTSNSLAKASKVGNDAEELSKNSGVNFMAYFSPTEQDKK TSEHSEITVTTKGENKRKVQDNVTPKLPEDPPILTGKRGFEANPHVGSSGKENKRNEVQQHSESFTNSTSKPKRSNKVQSLTQKKGNVKGGRRGSDANTG EVLNGTARKKPSSVIKTNLFGDGSDDTLETYVFPSQLSSTPEPDSDVSSDPDGESDAGFDGETRNASGGGEGMKTPFPPGVSLGTILKSSKRFKNAKLDA ESQPDDFIPMSPSVSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	0	1
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	1.4	0.9576
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	2.4	0.9555
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	3.0	0.9452
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	6.0	0.9433
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	7.1	0.9312
AT5G14050			Transducin/WD40 repeat-like su...		Lus10038375 [exp]	7.7	0.9381
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10014591 [exp]	8.9	0.9166
AT3G51650			unknown protein		Lus10025250 [exp]	9.2	0.8875
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10039080 [exp]	9.2	0.8707
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	10.1	0.9115

Compare expression of checked genes

Lus10011397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.