Plant FIBer expression Database

Lus10011398 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G24490 339 / 7e-112 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
AT2G28800 278 / 5e-90 ABL3, ALB3 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006454
[exp]
721 / 0 AT1G24490 516 / 0.0 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Lus10040841
[exp]
239 / 2e-73 AT2G28800 586 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Lus10016570
[exp]
219 / 7e-66 AT2G28800 557 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G051900
[exp]
372 / 5e-124 AT1G24490 501 / 3e-174 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Potri.008G182000
[exp]
364 / 2e-121 AT1G24490 503 / 3e-175 ARABIDOPSIS THALIANA ENVELOPE MEMBRANE INTEGRASE, ALBINA 4, OxaA/YidC-like membrane insertion protein (.1.2)
Potri.009G029100
[exp]
263 / 1e-82 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
Potri.001G237800
[exp]
256 / 4e-80 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0376 Oxa1 PF02096 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence
>Lus10011398 pacid=23159208 polypeptide=Lus10011398 locus=Lus10011398.g ID=Lus10011398.BGIv1.0 annot-version=v1.0
ATGGCGGCAGCTGCTTTCCCTTCAGTGCTCCCCTCCGCCGCTCTCTCTTCCTTCCCTGAACGGACCAGACCCTTCCCGACGAACCCTTTACTCCGAAGGC
CGTACTTCCCCGCCGGATTAACATCCATTCACAAGCCTTCCCTTCGGAGCTGCGGCGTCGCTCGGTTCGGATTCCACCCGGGTTCTTTTTCCGACTCGAA
CGTATTCGAGAGACTCGAGAGTGTTATCTACACGATTGCTGATGCTGCGGTGGCGAATTCCGATGTTATCGACTCGGCTACTACTACCACCGCTAAGCGG
AACAACGACTGGTTCTCTGGAATCACCTATTACATGGAAAGCATTTTGAAGGTTTTGAAGGATGTGTTATCGACTTTGCACGTTCCGTATTCATACGGTT
TTGCTATCATACTGTTGACGATTATTGTAAAGGCTGCGACTTTCCCGTTGACTAGGAAGCAGGTGGAATCTGGAATGGCTATGAGGTCTTTGCAGCCTCA
AGTGAAGGCTATTCAGGAACGGTATGCTGGAGATCAGGAGAAGATCCAGCTCGAGACTGCTCGGGTGTATAAGCTCGCAGGAGTCAACCCTCTCGCAGGT
ACTTCGAAAAATGTAGACTCTTTAAGTTCTGATAGTTGTGGGGGATTTGATCCGGGACTCCTCACTGAAGGGTTCTTTTGGATACCGTCCCTCTCCGGTC
CAACTACGATCGCAGCTCGCCAAAGTGGCGGTGGCATCTCCTGGCTCTTCCCTTTTGTGGATGGACATCCACCACTCGGGTGGTCAGACACCTTAGCTTA
CCTTGTCTTGCCCGTGTTGCTGGTTCTCTCGCAATTCATTTCCATCGAGATAATGCAATCATCACAGCCACAGCAAGTCTGGCTTCAAAAGTTGGGAGGC
GCTAAAAATCCGGTGAAGCAACTGAACGATGATCTGATAAAAAAGGTCAAGACTGAGAAGCCTGCTTTGGATATGAACTCCATGAAAGCCACAACGGTTG
AGATCAATTCCACGAAAGTCACGACCATGAAGGAAGAAAAGTCGACACCTGAAGGGCTACGTCCTGGTGAAAGGTCGATCAGCTGGATGACTTTACTTCA
TAGATTTAAGCGTTTGAAAGAGGAGGAAGCTAGGAGACGGGAGGAAGAGAAGCGGAAAGCTGAAGAAGCATCCCACAAAGCCACGGTCCTTAACGGTTCT
GTGAATGGTCAGGACAATACGAAAGACGAGAAGCCGGCTACCCAAGCTGATGCCGAGAATCAAGTTTCTCTCAATGGCAATGTTAATAGGAAGAAAGAGG
AGCAGTCTGATGAGGAAAAGAACCAGAAGGTAAAAAACACATTTAACTCTGTTCCCAGTAGTAAAGATCAGATCTTTGTTAATTTCCCATTTCCTATACT
CTACTCAAACAATGTGTTTTATCATTGA
AA sequence
>Lus10011398 pacid=23159208 polypeptide=Lus10011398 locus=Lus10011398.g ID=Lus10011398.BGIv1.0 annot-version=v1.0
MAAAAFPSVLPSAALSSFPERTRPFPTNPLLRRPYFPAGLTSIHKPSLRSCGVARFGFHPGSFSDSNVFERLESVIYTIADAAVANSDVIDSATTTTAKR
NNDWFSGITYYMESILKVLKDVLSTLHVPYSYGFAIILLTIIVKAATFPLTRKQVESGMAMRSLQPQVKAIQERYAGDQEKIQLETARVYKLAGVNPLAG
TSKNVDSLSSDSCGGFDPGLLTEGFFWIPSLSGPTTIAARQSGGGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVLSQFISIEIMQSSQPQQVWLQKLGG
AKNPVKQLNDDLIKKVKTEKPALDMNSMKATTVEINSTKVTTMKEEKSTPEGLRPGERSISWMTLLHRFKRLKEEEARRREEEKRKAEEASHKATVLNGS
VNGQDNTKDEKPATQADAENQVSLNGNVNRKKEEQSDEEKNQKVKNTFNSVPSSKDQIFVNFPFPILYSNNVFYH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G24490 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE ... Lus10011398
[exp]
0 1
AT1G70610 ABCB26, ATTAP1 ATP-binding cassette B26, tran... Lus10036857
[exp]
3.0 0.7676
AT4G00630 ATKEA2, KEA2 K+ efflux antiporter 2, K+ eff... Lus10018844
[exp]
12.1 0.7505
AT4G17300 ATNS1, NS1, OVA... ovule abortion 8, Class II ami... Lus10007470
[exp]
18.8 0.6759
AT1G01790 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFF... Lus10017823
[exp]
24.1 0.7015
AT4G30950 FADC, SFD4, FAD... STEAROYL DESATURASE DEFICIENCY... Lus10035831
[exp]
25.8 0.6970
AT3G09440 Heat shock protein 70 (Hsp 70)... Lus10009071
[exp]
30.9 0.6556
AT1G76270 O-fucosyltransferase family pr... Lus10013234
[exp]
33.0 0.6587
AT2G40570 initiator tRNA phosphoribosyl ... Lus10012958
[exp]
37.1 0.6340
AT3G56140 Protein of unknown function (D... Lus10040960
[exp]
38.8 0.6605
AT2G02910 Protein of unknown function (D... Lus10037186
[exp]
39.7 0.6608

Lus10011398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.