Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24780 564 / 0 Pectin lyase-like superfamily protein (.1.2) AT1G67750 560 / 0 Pectate lyase family protein (.1) AT5G63180 548 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 538 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G27400 528 / 0 Pectin lyase-like superfamily protein (.1) AT3G24670 516 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 513 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G07010 511 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 507 / 8e-180 Pectin lyase-like superfamily protein (.1) AT1G04680 499 / 2e-176 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006456 [exp] 701 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 592 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 545 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 528 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 528 / 0 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 521 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 518 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 517 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 513 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182200 [exp] 577 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 570 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 568 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 567 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 556 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 513 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 509 / 2e-180 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 506 / 5e-179 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 503 / 8e-178 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 442 / 2e-153 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10011400 pacid=23159211 polypeptide=Lus10011400 locus=Lus10011400.g ID=Lus10011400.BGIv1.0 annot-version=v1.0 ATGGATACCCAATTGCTCTCTCTTCTTCTTCTCTTAACTGTTCTTCAACTACCACCCCACATTGCATCCTCCCCTGTTCCGGACCCGGATCTTGTCGCTG ATGAAGTCAACAGGATCATCACCAATGCTACAAATTCTCGAAGAAATTTAGGGTTCCTCTCTTGCAAAACAGGGAATCCAATCGACGATTGTTGGAGGTG CGACTCGAATTGGCACAAGAATCGAAAAAGACTAGCGGATTGCTCGATCGGGTTTGGAAAGAACGCGATTGGAGGGCGGGATGGTAAATTCTACGTGGTG ACCGACTCAGGCGACCACCCGGTCAACCCGAAACCGGGGACTTTACGTTACGGGGTGATCAGAGACGAGCCACTTTGGATCGTGTTCGCTAGGGACATGG TCATCAAGCTGAAAGCGGAGCTAATGATGAACTCTTTCAAAACGATTGATGGTAGGGGAGCCTCCGTGCACATAGCCGGAGGGCCCTGCATCACGATCCA GTACGTGAACAACATTATCATCCACGGGATCAACGTCCACGACTGTAAATCGGGCGGGAACTTGAACGTTAGGGACTCCCCCGATCATTTCGGGTGGAGG ACTAGGTCGGACGGAGATGGGATCTCAATCTTCGGAGGGAGCCATGTTTGGGTTGACCACGTGTCACTGTCCAACTGTCAGGATGGGTTGATCGATGCGA TTCACGGGTCGACCGCAATCACGATCTCGAATAACTACATGACCCACCATAACAAGGTCATGTTGTTGGGACATAGTGATGGGTTTGTTAGGGACAAGAT TATGCAAGTCACTATTGCCTTTAACCACTTTGGTGAAGGGTTGGTCCAGAGGATGCCAAGGTGTAGGCATGGGTATTTCCACGTGGTGAACAATGACTAT ACTCATTGGCTAATGTATGCAATTGGTGGGAGTGCTTCTCCAACCATCAATAGCCAAGGGAATAGGTTCTTGGCACCAAATGATAGGTTCAACAAAGAGG TGACGAAACGGGAGGAAGCGGGAGAGAGCGAGTGGAAGAAGTGGAACTGGAGATCAGAAGGGGACCTATTGCTCAACGGTGCATTCTTCACAAGGTCCGG AGCCGGAGCATCATCGAGCTATGCTAAAGCATCGAGCTTGGGAGCTAGGCCTTCTTCTCTTGTGGGTCCACTCACTAGTGCTGCTGGCTCACTTGTTTGC AAAAAGGGCTCATCTTGCTGA
AA sequence Show only first row Show all	>Lus10011400 pacid=23159211 polypeptide=Lus10011400 locus=Lus10011400.g ID=Lus10011400.BGIv1.0 annot-version=v1.0 MDTQLLSLLLLLTVLQLPPHIASSPVPDPDLVADEVNRIITNATNSRRNLGFLSCKTGNPIDDCWRCDSNWHKNRKRLADCSIGFGKNAIGGRDGKFYVV TDSGDHPVNPKPGTLRYGVIRDEPLWIVFARDMVIKLKAELMMNSFKTIDGRGASVHIAGGPCITIQYVNNIIIHGINVHDCKSGGNLNVRDSPDHFGWR TRSDGDGISIFGGSHVWVDHVSLSNCQDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDGFVRDKIMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY THWLMYAIGGSASPTINSQGNRFLAPNDRFNKEVTKREEAGESEWKKWNWRSEGDLLLNGAFFTRSGAGASSSYAKASSLGARPSSLVGPLTSAAGSLVC KKGSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	0	1
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	1.4	0.8260
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	3.5	0.8303
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	4.9	0.8128
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	9.8	0.8115
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	10.7	0.7933
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	14.0	0.7960
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	15.5	0.7712
AT4G23690			Disease resistance-responsive ...		Lus10017538 [exp]	16.7	0.7763
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	17.7	0.7513
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	18.9	0.7848

Compare expression of checked genes

Lus10011400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.