Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24510 1012 / 0 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 312 / 5e-100 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 281 / 1e-87 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 265 / 5e-82 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 256 / 3e-78 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 248 / 4e-75 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G16070 209 / 8e-61 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 207 / 3e-60 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 189 / 2e-53 TCP-1/cpn60 chaperonin family protein (.1) AT1G67760 99 / 9e-25 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006457 [exp] 1098 / 0 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 1057 / 0 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006240 [exp] 858 / 0 AT1G24510 816 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10000113 [exp] 673 / 0 AT1G24510 648 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008670 [exp] 302 / 3e-96 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 284 / 3e-89 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 284 / 3e-89 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 281 / 2e-88 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 279 / 4e-87 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051700 [exp] 1012 / 0 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 1008 / 0 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 318 / 2e-102 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 314 / 9e-101 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 285 / 3e-89 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 283 / 1e-88 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 281 / 5e-88 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 278 / 6e-87 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 275 / 6e-86 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 261 / 3e-80 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10011401 pacid=23159187 polypeptide=Lus10011401 locus=Lus10011401.g ID=Lus10011401.BGIv1.0 annot-version=v1.0 ATGGCGTTGGCCTTCGACGAGTACGGGAGACCGTTCATCATCATAAAGGAGCAGGAGCAGAAGACTCGGCTTCGAGGTCTCGATGCTCACAAGGCTAACA TCTCCGCCGCTAAGGCCGTCGCTCGCATCCTCCGCACTTCTCTCGGTCCCAAGGGGATGGACAAGATGCTCTCCAGCCCCGACGGCGAAGTCACCATCAC CAATGATGGTGCTACGATCTTGGAGCAGATGGATGTGGACAATCAAATTGCAAAACTGATGGTTGAGCTATCGAGGAGTCAGGATTATGAAATTGGAGAT GGCACTACTGGTGTTGTTGTAATGGCTGGAAGCCTACTAGAGCAAGCTGAGAAGTTGCTAGAACGTGGTATTCACCCGATTCGAATTGCTGAGGGTTATG AGATGGCATCTAGAATAGCTGTTGAACACATGGAACGTATTGCTCACAAGTTTGAATTTGAAGAGAAGAACATTGAACCCCTTGTTCAAACTTGCATGAC TACTTTGTCTTCAAAGATTGTGAACAGGTGCAAGCGTAGTTTGGCCGAAATTGCTGTCAAAGCTGTTCTTGCTGTTGCTGATTTGGAACGGAAAGATGTT CATTTGGACTTGATAAAAGTTGATGGGAAGGTTGGTGGTAAGCTGGAAGACACTGAACTGATATACGGGATAGTTATAGACAAGGACATGAGTCACCCGC AGATGCCAAAGCAAATTCAAGATGCGAAAATTGCCATCTTGACGTGCCCTTTTGAGCCCCCGAAGCCAAAGACTAAGCATAAGGTGGACATTGATACAGT GGAGAAGTTTGAGGCTCTCCGTAAGCAGGAGCAGCAGTACTTTGACGACATGGTTCAAAAGTGCAAGGATGTTGGTGCTACTCTGGTTATCTGCCAGTGG GGATTCGACGATGAGGCCAACCATTTGCTGATGCACCGAAACCTGCCTGCTGTTCGTTGGGTTGGTGGAGTAGAGCTGGAGCTGATAGCAATTGCCACTG GTGGCAGAATTGTTCCACGATTCCAGGAGCTGACACCAGATAAGCTCGGAAAGGCTGGTTTGGTTCGGGAGAAGGCCTTCGGTACCACAAAAGACCGGAT GCTACACATTGAACACTGTGCAAATTCCAAGGCTGTCACCATATTTATTCGTGGAGGTAACAAAATGATGATAGAAGAGACCAAGCGAAGCATCCACGAC GCACTATGCGTGGCTAGGAATCTAATCCGCAACAACTCGATCGTGTATGGCGGTGGCTCTGCGGAAATATCATGCTCAATCGCTGTAGAAACTGCTGCAG ACCGATACCCCGGTGTTGAGCAGTACGCCATTCGAGCATTTGCAGATGCTTTGGACGCAGTCCCAATGGCTCTAGCTGAAAACAGTGGACTTCAACCCAT TGAAACACTATCTGCAGTGAAATCCCAGCAAATCAAGGAGAATAACCCTCATTTCGGAATCGATTGCAACGATGTGGGCACAAATGACATGCGCCAGCAG GACGTGTTTGAGACTCTGATCGGCAAGCAGCAGCAGATACTGCTCGCGACACAGGTCGTCAAGATGATCTTGAAGATCGACGATGTCATCTCCGCCGCCG AGTTCTAG
AA sequence Show only first row Show all	>Lus10011401 pacid=23159187 polypeptide=Lus10011401 locus=Lus10011401.g ID=Lus10011401.BGIv1.0 annot-version=v1.0 MALAFDEYGRPFIIIKEQEQKTRLRGLDAHKANISAAKAVARILRTSLGPKGMDKMLSSPDGEVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGD GTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHMERIAHKFEFEEKNIEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDV HLDLIKVDGKVGGKLEDTELIYGIVIDKDMSHPQMPKQIQDAKIAILTCPFEPPKPKTKHKVDIDTVEKFEALRKQEQQYFDDMVQKCKDVGATLVICQW GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPDKLGKAGLVREKAFGTTKDRMLHIEHCANSKAVTIFIRGGNKMMIEETKRSIHD ALCVARNLIRNNSIVYGGGSAEISCSIAVETAADRYPGVEQYAIRAFADALDAVPMALAENSGLQPIETLSAVKSQQIKENNPHFGIDCNDVGTNDMRQQ DVFETLIGKQQQILLATQVVKMILKIDDVISAAEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10011401 [exp]	0	1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006457 [exp]	1.0	0.9501
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	3.0	0.8879
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010892 [exp]	6.3	0.8766
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	11.2	0.8746
AT1G04030			unknown protein		Lus10003613 [exp]	11.3	0.9004
AT3G54750			unknown protein		Lus10029345 [exp]	12.0	0.8981
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	13.8	0.8921
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	18.5	0.8900
AT4G02800			unknown protein		Lus10014668 [exp]	27.4	0.8952
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003385 [exp]	28.5	0.8679

Compare expression of checked genes

Lus10011401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.