Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24530 392 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 301 / 7e-99 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 254 / 4e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 230 / 5e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 223 / 3e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 223 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 223 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 202 / 8e-61 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 199 / 2e-60 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 201 / 1e-59 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006460 [exp] 624 / 0 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 436 / 9e-152 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029206 [exp] 266 / 8e-85 AT1G24130 353 / 5e-119 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 260 / 5e-83 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 258 / 2e-81 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 227 / 6e-70 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 225 / 2e-69 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 218 / 1e-66 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024180 [exp] 211 / 8e-64 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050900 [exp] 416 / 6e-144 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 297 / 8e-98 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 286 / 2e-93 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 244 / 2e-76 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 236 / 2e-73 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 222 / 1e-67 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 219 / 3e-66 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 216 / 5e-66 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 217 / 7e-66 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 216 / 1e-64 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011402 pacid=23159234 polypeptide=Lus10011402 locus=Lus10011402.g ID=Lus10011402.BGIv1.0 annot-version=v1.0 ATGAAAATCCACTCATTTCTCACCGCCGGCAAAGCCTCCCCTGCTTCCGACCACCACAACAATCATTCCGCATCCAATTCTCCATCCTCCTCCAACGGCA GCCTCCACAGCAATCTATCCCTCCAAACTCACCCTTCTCTCCCTTCCCTCAACAAATCCCCTTTCAACTCCTCATCATCCTCAGCCGCCGTCGACTTCTT CTGCTCCACCACTCTCCGACCAAGCTCTGACAACCACCCAATCACCTCCCTCTCCGTCCATGGAAACCACCTCTACGCTGCCACCGGCCACCGAATCTCT GTCTACGACCGCGCCACCTCCTCCTTCCTTGATTCTTTCAACGGATCCGATGACTCCACCGGATCCGTCAAGGCAGTCGTTTTTTCCGGCGACGGCCGTA TCCTGACCGCTCATCAGGACACCCGCATTCGCACCTGGAAATCGAAATCGAAAAGTACCGAATCCAATCAGCACAAATTGATCGCGGCTCTCCCGACGGC GACGGACCGCCTCCGCCATTTGGCATTTCCGAGCAGCTACGTCACCGTCCGCCGCCACCGTAAAATCCTGAAAATTCAGCACGCCGACGCGGTGTCCGAC CTGGCAGTCAACGGCAGTCAAATTTACTCGGTCTCGTGGGACCGGAGCTTGAAGATCTGGAAATCCTCAAGCCTCCGTTGCACTGAATCACTCCAAGCGG CTCACGACGACGCTATCAATAGCTTAGTCGTTTCCAAAGACGGAGTGGTTTACACAGGGTCAGCCGACTGCAGGATTCGGGTTTGGAACAAACCCGAATC TGGAAGCAGACACTTGCTGTTGGCCACACTGGAGAAGCACAAGTCGGCGGTGAACGCATTGGCATTAACCGGCGACGGGTCGGTTTTGTTCTCCGGGTCA TGCGATCGGTCGATTTTGGTGTGGGAGAGGGAGGACACTGCCGACTATATGACGGTGATCGGAGCTCTGAGAGGCCACGAGAAAGCGGTACTCTGTTTAA TCAGCGTCGGAGATTTGTTGGTGAGTGGTTCGGCTGATCGGACGGTGAGGATATGGGTACGTGGCGACGGCGGGAAGTATTCTTGTTCGGCGGTTATGGA CGGGCACAAGGCGGCGGTTAAGTCGTTGGCGGGCTTTTCGCAAGACGGTGTCGTTTTTGTGTATAGTGGGAGTTTGGACGGGGAGATTAAGGTGTGGAGA GTTGATGTTAGATGA
AA sequence Show only first row Show all	>Lus10011402 pacid=23159234 polypeptide=Lus10011402 locus=Lus10011402.g ID=Lus10011402.BGIv1.0 annot-version=v1.0 MKIHSFLTAGKASPASDHHNNHSASNSPSSSNGSLHSNLSLQTHPSLPSLNKSPFNSSSSSAAVDFFCSTTLRPSSDNHPITSLSVHGNHLYAATGHRIS VYDRATSSFLDSFNGSDDSTGSVKAVVFSGDGRILTAHQDTRIRTWKSKSKSTESNQHKLIAALPTATDRLRHLAFPSSYVTVRRHRKILKIQHADAVSD LAVNGSQIYSVSWDRSLKIWKSSSLRCTESLQAAHDDAINSLVVSKDGVVYTGSADCRIRVWNKPESGSRHLLLATLEKHKSAVNALALTGDGSVLFSGS CDRSILVWEREDTADYMTVIGALRGHEKAVLCLISVGDLLVSGSADRTVRIWVRGDGGKYSCSAVMDGHKAAVKSLAGFSQDGVVFVYSGSLDGEIKVWR VDVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	0	1
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	1.4	0.8758
AT1G13570			F-box/RNI-like superfamily pro...		Lus10006346 [exp]	2.0	0.8611
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	3.0	0.8626
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	4.5	0.8534
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	5.2	0.8853
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	6.0	0.8363
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	8.1	0.8095
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10017794 [exp]	9.2	0.8068
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10004828 [exp]	9.9	0.8016
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	10.1	0.7727

Compare expression of checked genes

Lus10011402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.