Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13130 610 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26130 582 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26140 570 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT5G17500 545 / 0 Glycosyl hydrolase superfamily protein (.1) AT5G16700 484 / 4e-167 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006461 [exp] 1111 / 0 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10011404 [exp] 714 / 0 AT1G13130 605 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10006462 [exp] 703 / 0 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10024686 [exp] 353 / 5e-115 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10032312 [exp] 286 / 5e-90 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10005737 [exp] 64 / 1e-12 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183400 [exp] 707 / 0 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049700 [exp] 697 / 0 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049800 [exp] 542 / 0 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.001G097901 [exp] 361 / 2e-118 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10011403 pacid=23159212 polypeptide=Lus10011403 locus=Lus10011403.g ID=Lus10011403.BGIv1.0 annot-version=v1.0 ATGGCTAATCATAAGCATCACATTAACTTATTATCCACCATCTTCCTCCTCTTCCTCTTCCTCCTCCTCCCCCAAAAATCCACACCTTACCCACTCTCCA CCTCCTCCCGGTGGATCGTTGACGACGCCGCCGCCGGCCGGCGAGTCAAGCTGGCCTGCGTCAACTTGGTCTCCCACTTGGAACCCTTGGTGGCAGAGGG GCTCAGCAAACTACCCATTGAAGCCATCGCTGGAAAGATCACTTCTTTGGGGTTCAATTGCGTCCGGCTCACTTGGCCGATCTACTTGGTCACGAATGAC TCGTTGGGTTCGCTCACCGTCCGGGAATCTTTCCGGGGGCTTGGGCTGTTTGATTCCCTCGCCGGGATTCAGGCCAATAATCCGGCCATCGTTGACCTTA GCCTTGTCATGGCTTTCCAGAAAGTGGTCTCATCACTCGGAGAAAACAACGTGATGGTGATCCTAGACAACCACATCACCACACCGGGCTGGTGCTGCAG CAACAACGACGGCAACGGGTTCTTCAACGACCAATTGTTCGACCCCGAGCTCTGGATAACCGGTCTAACCAAAATGGCCACCATGTTCAGAGCCTCGACC ACCGTGGTGGGGATGAGCTTGAGGAACGAGCTACGTGGACCTAGGCAGAACTCCAACGACTGGTACAAGTACATGCAGAGAGGGGCCGAGGCGGTCCACT CTGCAAACCCTAACGTACTAGTCGTGCTTTCGGGGCTCAGCTTCGACACAGACTTGAGCTTCCTGAGCAGGAAGATGGTGAGTTTGAGCTTCGGGAAGAA GCTCGTGTTCGAGATGCATTGGTACGGGTTCTCGGACGGGCAGGCGTGGGCCAATGGCAATGTGAATGATGTGTGTGGGAGAGTGGGTCGGGAGAAGGTG CGGAATGGACTTTTCTTGGTGGAGAAAGGTTACCCTTTGTTTGTTAGCGAATTTGGACTCGACTTGCGAGGGACGAACGTGAACGATAATAGGTACGCAG ATTGTTTCATGGCGTACGCCGCGGAGCATGACTTGGATTGGGCGTATTGGACGATCGTCGGGAGCTATTACTTGAGGCAAGGGATCGTCGGCTTGAGCGA GGTTTACGGGCTGTTGGATGTGGACTGGATGGAGTTGAGGAATCAGAGTTTCATAGAAAAGATCAAAGGGATTCAAGCACCCTTTCAAGGACCCGGATTG GGAGAAAGGAGACAACACCAAGTGATATTCCACCCATCGACAGGGAAATGCATCCTAAGAGGGAAAACATATCTAGATCCACTAACTCTCGGACCCTGCA CCGAATCCGACGCTTGGAGCTACTCCTCGAAAGGATCCCTATCCCAGGTAGGAACATACTTCTGCTTGAAGGCCAACGAGCTAGGACAACCGGTACAACT CGACATGGACTGTTCCAACTGGGCGATGATCTCCGACTCAAAGATGCACATATCAACCAAGCTAGATGACGGGACATCATCAGTCTGCTTGGATGTCGAT ACAGACAACGACAACATCATCATCGCGAACCCTTGCAAGTGCTTGAGCAAAGACAAGGGGTGCGATCCAGTTAGCCAGTGGTTCAAGCTGGTGGCCAGCA CTAGGGCTCCAAGTGGGGGAGATGATAGATTGGTAACAAGAGCAAGGGAAATGTTGTTTAAGGTATTGGATATGGTATTGTACTACGTTGGAAGAATGTT TGGTACATTGGCTCTCAAAATTGCTAGGGAAATTGAAGGTTAA
AA sequence Show only first row Show all	>Lus10011403 pacid=23159212 polypeptide=Lus10011403 locus=Lus10011403.g ID=Lus10011403.BGIv1.0 annot-version=v1.0 MANHKHHINLLSTIFLLFLFLLLPQKSTPYPLSTSSRWIVDDAAAGRRVKLACVNLVSHLEPLVAEGLSKLPIEAIAGKITSLGFNCVRLTWPIYLVTND SLGSLTVRESFRGLGLFDSLAGIQANNPAIVDLSLVMAFQKVVSSLGENNVMVILDNHITTPGWCCSNNDGNGFFNDQLFDPELWITGLTKMATMFRAST TVVGMSLRNELRGPRQNSNDWYKYMQRGAEAVHSANPNVLVVLSGLSFDTDLSFLSRKMVSLSFGKKLVFEMHWYGFSDGQAWANGNVNDVCGRVGREKV RNGLFLVEKGYPLFVSEFGLDLRGTNVNDNRYADCFMAYAAEHDLDWAYWTIVGSYYLRQGIVGLSEVYGLLDVDWMELRNQSFIEKIKGIQAPFQGPGL GERRQHQVIFHPSTGKCILRGKTYLDPLTLGPCTESDAWSYSSKGSLSQVGTYFCLKANELGQPVQLDMDCSNWAMISDSKMHISTKLDDGTSSVCLDVD TDNDNIIIANPCKCLSKDKGCDPVSQWFKLVASTRAPSGGDDRLVTRAREMLFKVLDMVLYYVGRMFGTLALKIAREIEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	0	1
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	1.7	0.8862
AT3G20340			unknown protein		Lus10021518 [exp]	3.2	0.8537
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	4.6	0.8428
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	5.7	0.8632
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10033905 [exp]	7.1	0.8566
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10011231 [exp]	7.7	0.8372
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	8.0	0.8542
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	9.8	0.8248
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	13.0	0.8295
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	16.9	0.8262

Compare expression of checked genes

Lus10011403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.