Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13130 603 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26140 580 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT3G26130 572 / 0 Cellulase (glycosyl hydrolase family 5) protein (.1) AT5G17500 530 / 0 Glycosyl hydrolase superfamily protein (.1) AT5G16700 460 / 8e-158 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006462 [exp] 1116 / 0 AT1G13130 601 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10011403 [exp] 712 / 0 AT1G13130 610 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10006461 [exp] 704 / 0 AT1G13130 612 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10024686 [exp] 348 / 4e-113 AT3G26140 364 / 4e-120 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10032312 [exp] 289 / 6e-91 AT3G26140 298 / 2e-95 Cellulase (glycosyl hydrolase family 5) protein (.1) Lus10005737 [exp] 59 / 8e-11 AT3G26130 66 / 2e-14 Cellulase (glycosyl hydrolase family 5) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183400 [exp] 733 / 0 AT1G13130 676 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049700 [exp] 704 / 0 AT1G13130 679 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.010G049800 [exp] 566 / 0 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1) Potri.001G097901 [exp] 372 / 1e-122 AT1G13130 393 / 2e-131 Cellulase (glycosyl hydrolase family 5) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10011404 pacid=23159218 polypeptide=Lus10011404 locus=Lus10011404.g ID=Lus10011404.BGIv1.0 annot-version=v1.0 ATGGCGAAGCATCACCTGAAAAATCACTGCTTAGTCATCTCCCTTCTCCTCATCTTCATCTCATCTTCATCGATCCTCCACAACCAAAAAGCCTCGGCAT TACCGCTCTCCACCGAATCACGGTGGATCGTCGATGAAGCCACCGGCCGGCGAGTGAAGCTCGCCTGCGTGAACTTGGCATCCCACTTGGAACCCATGGT GGCCGAAGGTCTGAACAGACTACCCATCAACGTGATCGCCCAGAAGATCACTTCAATGGGGTTCAATTGCGTCCGCCTCACTTGGCCGCTCTACTTGGTC ACCAACTCCACTCTGGGTTCCACCACCGTCCGGCAATCTTTCCGGAGACTCCAGTTGCTTGAGTCGATTAGAGGGATTCAGGCTAATAACCCTTCGATCA TCGACGTTTCGCTTCTGCAGGCGTTCAAGGAAGTGGTGAGGAAGCTAGGGGAAAACAATGTAATGGTGGTACTAGACAATCACGTAACGAAGCCAGGTTG GTGCTGCAGGGACTCTGACGGCAATGGTTTCTTCGGCGACGAGTACTTCAGTCCTGATTTATGGGTGGAAGGTCTGACTCGAATGGCCACCATGTTTAAA GGGTCTAGAAATGTTGTTGCAATGAGCTTGAGGAACGAGCTTCGTGGACCTAAACAGAATTCCAACGACTGGTACAGGTATATGACAAGAGGAGCTGAAG CAGTGCACACCGCAAACCCGGATGTTCTAGTGATTCTTTCGGGGCTGAACTACGATGGGGACTTGTCGTTTCTAAACGTCGAGCCGGTGAAGTTGACGTT CAGCAAGAAGTTGGTGTTCGAGGTCCATTGGTACGGGTTCACGGATGGGGACGGGTGGAAGAATGGGAACCCGAACCAAGTGTGTGGACTTGTGATCGAT CACTTGAGGAAATCTGCAGGGTTTGTGTTGGATAAGGAGTATCCGTTGTTTGTGAGCGAGTTTGGGATTGATCAGAGTGGTGGGAATGTGAATGATGATC GGTTTATAAACTGCTTCCTTGGTTATGCAGCTGAGCTTGACTTGGATTGGGCAGTGTGGACTGTGGCTGGGAGTTACTATTTAGGGGAAGGTGTTGTTGG GATGAGTGAGCCTTATGGGTTGCTGAATTCGGATTGGGTTGAGATTCGGAACACTGCGTTCTTGGAGAAGCTTTCTGCACTTCAGAAACCTTTCCAAGGA CCAGGTTTGGAAGAGGTGAAGCTCCACAAGGTGATATTCCACCCATCAACAGGGCTATGTGTCCACAGAGGCAGAACAGATTCCGAACCTTTAAAGCTAG GACCTTGCTCGAGGTCCGATCCCTGGAGCTACGATAAGAAGACCTTATCAGTAATGGGAACACATCTATGCTTGATGGCTCAGCAGCTATCCAAGCCTGC ACAGATCCAGCTAGAGTACTGTCCTACGTGGGAGATGATCACAGACTCCGGAATGCACCTCTCGAGCAAGCTACAGGATGGGACACCAGTCTGCTTAGAT GTGGACTCGAACAACAACAGCGAGATCGTCACAAGCCCTTGCAAGTGTCTGAAAGCAGAAGAGACAAAGTGTGACCCTGGAAGCCAGTGGTTCAAGTTGG TTGACAGCACAAGGAGAGGAAATGGGAAAGGTTTGCCTTCGGGGACTAATCGGTTGACTCGTGGCGGGTTCTCTTCGGGGAGGAGTTTGCTGTGGGAGTT CTTGAGCTTGGCCTTGGCTTGA
AA sequence Show only first row Show all	>Lus10011404 pacid=23159218 polypeptide=Lus10011404 locus=Lus10011404.g ID=Lus10011404.BGIv1.0 annot-version=v1.0 MAKHHLKNHCLVISLLLIFISSSSILHNQKASALPLSTESRWIVDEATGRRVKLACVNLASHLEPMVAEGLNRLPINVIAQKITSMGFNCVRLTWPLYLV TNSTLGSTTVRQSFRRLQLLESIRGIQANNPSIIDVSLLQAFKEVVRKLGENNVMVVLDNHVTKPGWCCRDSDGNGFFGDEYFSPDLWVEGLTRMATMFK GSRNVVAMSLRNELRGPKQNSNDWYRYMTRGAEAVHTANPDVLVILSGLNYDGDLSFLNVEPVKLTFSKKLVFEVHWYGFTDGDGWKNGNPNQVCGLVID HLRKSAGFVLDKEYPLFVSEFGIDQSGGNVNDDRFINCFLGYAAELDLDWAVWTVAGSYYLGEGVVGMSEPYGLLNSDWVEIRNTAFLEKLSALQKPFQG PGLEEVKLHKVIFHPSTGLCVHRGRTDSEPLKLGPCSRSDPWSYDKKTLSVMGTHLCLMAQQLSKPAQIQLEYCPTWEMITDSGMHLSSKLQDGTPVCLD VDSNNNSEIVTSPCKCLKAEETKCDPGSQWFKLVDSTRRGNGKGLPSGTNRLTRGGFSSGRSLLWEFLSLALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006462 [exp]	1.0	0.9356
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	1.4	0.9203
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	2.6	0.8778
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	3.0	0.9099
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	4.9	0.8994
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	6.3	0.8653
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	6.9	0.8531
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	6.9	0.8879
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	8.4	0.8897
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	9.4	0.8738

Compare expression of checked genes

Lus10011404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.