Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14420 565 / 0 RGLG2 RING domain ligase2 (.1.2.3.4) AT3G01650 563 / 0 RGLG1 RING domain ligase1 (.1) AT1G67800 545 / 0 Copine (Calcium-dependent phospholipid-binding protein) family AT1G79380 423 / 2e-146 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G63970 421 / 2e-146 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT5G07300 94 / 1e-20 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G08860 94 / 2e-20 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 94 / 3e-20 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 94 / 5e-20 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT1G59560 42 / 0.0005 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006463 [exp] 731 / 0 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10036879 [exp] 627 / 0 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 551 / 0 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 550 / 0 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 492 / 8e-173 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 489 / 1e-172 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 483 / 2e-169 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10000144 [exp] 452 / 2e-159 AT5G14420 384 / 2e-132 RING domain ligase2 (.1.2.3.4) Lus10020885 [exp] 397 / 5e-136 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183600 [exp] 612 / 0 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 602 / 0 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 572 / 0 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.012G090100 [exp] 559 / 0 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 522 / 0 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 504 / 2e-178 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 459 / 3e-160 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.005G065700 [exp] 451 / 3e-157 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.008G081300 [exp] 431 / 5e-150 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.007G103700 [exp] 409 / 1e-141 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10011405 pacid=23159240 polypeptide=Lus10011405 locus=Lus10011405.g ID=Lus10011405.BGIv1.0 annot-version=v1.0 ATGGGAGGGAAAAGTTCCAAGGGATCGCGCAGTGGTAGCCGCCGGAAGGAGCTCTCTTCGTCTCACAGTTCCTTTAACCACCGTCACTCGCCACCGTCTC CGGCGCCGCAGCAGCAGCTGTATTTCATTCCCCAGCACCACAACGCGCCTCCGACGCTGGCGTACGGGAGGGCTGCGGCGGCGGACAGGAAGTATATCAG GATTACTGATGATTACCAGACCTTAGATCAGGTGACTGCTGCACTTTCACAAGCAGGGCTGGAATCATCCAACCTAATAGTCGGAATCGATTTCACGAAG AGCAACGAATGGACCGGAAGTAGATCATTCAACCACAAGAGCTTGCATCACATTGCCAACAATGCACTAAACCCATATGAACAAGCCATCTCCATCATTG GAAGGACCTTATCCGCATTTGATGAGGACAACTTGATCCCTTGCTACGGCTTCGGAGACTCTTCGACTCATGATCAGGATCTCTTCGGCTTCTATCCTGA AGACAGATTCTGTCATGGATTCGAGGAGGTCCTGTCCCGGTACAGAGAGATCGTGCCTCAGCTCCGCCTTGCTGGACCGACGTCCTTTGCACCGATTGTG GAGATGGGGATCACGATTGTTGAGGAAAGTGGTGGGCAGTACCATGTCCTTGTGATTATTGCAGATGGCCAGGTGACACGAAGCATTGATACCTGCCATG GACATCTGAGTCCTCAAGAGAAGAGGACTATTGATGCCATTGTGAAAGCTAGCGATTATCCACTGTCGATAATCCTAGTTGGTGTAGGAGATGGGCCATG GGACATGATGAGGGAGTTCGACGATAACATCCCTGCTCGAGCATTCGATAACTTCCAGTTTGTGAATTTCACTGAGATCATGGCCAAGAATGTGAACATG ACAAGGAAAGAAACAGAGTTTGCTCTTGCTGCATTGATGGAAATCCCTTCTCAGTACAAAGCCACTATTGAGCTTGGTCTACTAGGTCGTCGAAAAGGGA ATGGTCCGGAGAGGATAGCTCTACCTCCACCGCTCTATGGTTCATCTCCCTTTGCTAGGTCATTCCGATCAACCAACTTCCAGCAACGAACGCCTAGCTA TTCGGGTTATGGTTCGCCCGCAGCTGGCGTACCGGTCAATTCATCTCAGTATTCATCAAGCTTTGACCACGAAAACAAGGTTTGTCCGATTTGCCTTTCG AATCCGAAAAACATGGCATTTGGTTGTGGCCATCAGACATGTTTTGTCTGTGGTGAGGACCTACAATCATGTCCGATATGCCGATGTTCGATACAAACCA GAATCAGACTCTATGGCTAA
AA sequence Show only first row Show all	>Lus10011405 pacid=23159240 polypeptide=Lus10011405 locus=Lus10011405.g ID=Lus10011405.BGIv1.0 annot-version=v1.0 MGGKSSKGSRSGSRRKELSSSHSSFNHRHSPPSPAPQQQLYFIPQHHNAPPTLAYGRAAAADRKYIRITDDYQTLDQVTAALSQAGLESSNLIVGIDFTK SNEWTGSRSFNHKSLHHIANNALNPYEQAISIIGRTLSAFDEDNLIPCYGFGDSSTHDQDLFGFYPEDRFCHGFEEVLSRYREIVPQLRLAGPTSFAPIV EMGITIVEESGGQYHVLVIIADGQVTRSIDTCHGHLSPQEKRTIDAIVKASDYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNVNM TRKETEFALAALMEIPSQYKATIELGLLGRRKGNGPERIALPPPLYGSSPFARSFRSTNFQQRTPSYSGYGSPAAGVPVNSSQYSSSFDHENKVCPICLS NPKNMAFGCGHQTCFVCGEDLQSCPICRCSIQTRIRLYG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	3.5	0.9159
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	7.1	0.9394
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	7.3	0.8947
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	10.1	0.9239
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10024044 [exp]	13.2	0.8757
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	13.3	0.9286
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	20.3	0.8722
AT5G65030			unknown protein		Lus10026048 [exp]	22.8	0.9121
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	26.8	0.9218
					Lus10018816 [exp]	26.8	0.9136

Compare expression of checked genes

Lus10011405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.