Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26350 207 / 5e-59 unknown protein AT1G13050 176 / 7e-49 unknown protein AT4G26490 156 / 2e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 139 / 2e-36 unknown protein AT3G26360 107 / 2e-27 Ribosomal protein S21 family protein (.1) AT1G13030 118 / 3e-27 sphere organelles protein-related (.1) AT4G05220 69 / 8e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 62 / 2e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 62 / 3e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT1G61760 60 / 1e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006464 [exp] 544 / 0 AT3G26350 208 / 2e-63 unknown protein Lus10006466 [exp] 187 / 3e-55 AT3G26360 106 / 5e-31 Ribosomal protein S21 family protein (.1) Lus10036876 [exp] 180 / 3e-47 AT1G13030 323 / 4e-102 sphere organelles protein-related (.1) Lus10006228 [exp] 176 / 5e-46 AT1G13030 320 / 4e-101 sphere organelles protein-related (.1) Lus10015606 [exp] 140 / 8e-37 AT4G26490 221 / 1e-71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032906 [exp] 139 / 2e-36 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006465 [exp] 139 / 3e-36 AT1G13030 91 / 3e-20 sphere organelles protein-related (.1) Lus10037259 [exp] 61 / 6e-10 AT5G45320 182 / 2e-58 unknown protein Lus10006754 [exp] 61 / 8e-10 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G049000 [exp] 293 / 4e-90 AT3G26350 189 / 1e-56 unknown protein Potri.011G165500 [exp] 176 / 1e-49 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 168 / 7e-47 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.008G185100 [exp] 138 / 2e-33 AT1G13030 199 / 1e-55 sphere organelles protein-related (.1) Potri.010G048700 [exp] 137 / 3e-33 AT1G13030 194 / 1e-53 sphere organelles protein-related (.1) Potri.010G048600 [exp] 90 / 3e-21 AT3G26360 106 / 3e-31 Ribosomal protein S21 family protein (.1) Potri.008G184500 [exp] 94 / 4e-21 AT1G13050 53 / 3e-08 unknown protein Potri.004G234500 [exp] 76 / 3e-15 AT5G45320 173 / 7e-55 unknown protein Potri.003G046000 [exp] 74 / 1e-14 AT5G45320 164 / 3e-51 unknown protein Potri.002G180000 [exp] 58 / 3e-09 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01165 [flax] [poplar] Ribosomal_S21 Ribosomal protein S21
Representative CDS sequence Show only first row Show all	>Lus10011406 pacid=23159227 polypeptide=Lus10011406 locus=Lus10011406.g ID=Lus10011406.BGIv1.0 annot-version=v1.0 ATGAACTGGATATCGAAGATGGCCTCCGCCGCCGCCGCGGGGGTTGGGGAGAGGCAGCTTTTGTGCCGGACGCAGCAATCGCGGGGGATCCGAGTGAAGG TGTACGACGGGAACGTGGAGAGGGCGCTGACTGTTCTACAGAGGAAGATGCAGTCGAGCGGGATGGAGCGGCTGATTAAGAAGACGCAAAGGACTCACCT GAAGAACTCCGAGAAGCGAGTTCTAGCTCATAAGAATTTGCTTCATCGGGTTAAGGCCGAGGATCTGGCGCGAAAGCTCCAGGACATCCTCCATAAGAAG ATCAGGAATTTTTCTGTCATTCCAGCTGGGCCAGCAGTATTTAATCATGATTGTGGAAGCAAGGAAGCTAGTTGTAAGCAGCTAGTTAGTAAGGAAAACT CCAAAGGAGGTTTTATGAATGGGAAGCAGTCCAGACTAGCTGAGCTTTTGGCTGAGATTAGAGCTAAGCGCGTGGCTATTATACGGGCTATGCGAGGGAT CTTTATAGTGATTACGGTAGATGGTAGCTTTAGCTTTAGTGATTGGTTCATGATGGAAGGGTTCTTTCTGCCGCCGTTTGAGTCGATTCGTTTGTTCAAG GACGGAGATTTGGTCAGAGTCAAGAGGAAAGAGAAGGGTAATTTGGGAATGATGTTGGAGTTGGTCGGGAATCTTCTACTGGAGAATCAAGAGTTTGACA AGGTTAAGGAAGTGAAGAAGGTTTTGAAGAAGAGGAAAGCGATAGAGGAAGTTGGGAGCAGCTCAAAGAAGAAGAAAAAGAAGAATAAGGAGAAGGAGAG ATCTTCTGGTGATAGAAAGGCGAAAAAAGCTACGAGCATGTTTGTTAATGGTGATAAGAAAGATGAGGAAGATGATCCCAAGGATAATGAACTCCACAGA AATGTGACGAAGTCAACTGAAACTAACTCGGGCTTGAATGGTCATGTGGATGCATCATGTACGCCTTCCGAAACTAAAAAGGAAGAAGAGAAGCAAGTGT CTGCAACATGTTACGAGAAGCCTAGTCGAAAGAAGAATCGCAAAGTTAATGAAGAACCACCAGAGATGGTAACCGACACCGCTGAGGATAACGAAAAGAT TGAGAACACTGCATCGTGTAAATGTAACGGAAATGGAATTTCCTCAAGCCAGGATGACCCGAATTCTAGCCACAAACCTTCAGGCTGTCCGGTTTTTAAC CAGATTATCGACTTTGATAAGCTCCCGCCTTATTCAAACTCACCCAAGGAAGCTGACATTATCGCTTACCGGATTGTTCAGCTGACATCATCCTGGACTC CTGAGGTCTCGTCGTACCTGGTAGGGAAGATATCACAGTTCAACCCTGAATCCAATATGATCAAACTGGTCGCTGTTCCGAAGTATCCGTTGATCCCAGA GACCAAAATGGAGGATGATGAAGCACCAGAGGTGCTCCCGGAGACGTGCATTCTACAAGAAGATGGCTCTTTAGAGATCGAATTCTCATCACTGGTGGAA ATCCGCGCTGTAAAGAACCAGAGCAGCACTAACGACAGGAGTATCCACACTTCCGGTCAAGGTAGGTACTCATCAGAACGCAGAGAATCAACGAATCATC AGGACGAGTTTAGCCGGAGAGTATTACAGGAGGATTATGATTGGGATATAAGTGAGAGTTCCGGCAGAGACCAATGGACTTTGAAGGCCTTGAGACGCAG TGCAATAGTTATGTCCCGCCACCCGGAGACCAACCCTCACTTCGAAAGACCGTTACAACAACCCCATGGTAGCAACCGCGATCGTGACCACCGTGGTCAT GATCGCGGTCGCAATCACCGATCTTCCCCTCCGCATGTTGGTAGGGGCGGCGGTCAAACCACTCCTCCTCCGCACCACCAACACCAACATCATCATCATC AGCCGGATGCTCCTCACCACCGTCGTGACCGTGATCGAGAACGAGGCAGACGGTCTACGCCTCCGCGGACGCCAGTGCCGATCGGTATTGCTCCGAACAC TTCACTACCACATCACCACCACCACCACCACCGGCCGGAGGATCCTCCTCCTCACCTTGATAATAGTGAACACTTCCCTCTCCATGTCCAACCACCGCAT CGAGACGAAAACCGACCCGAATCATTGGGTCCTGATAGACCGAAACAAGGCGGTCACTTCCAAAGTCCATGGGCCATCCCACCTCCCCGCCCACATCCGG CTCATCACCCAGACGGCCACCACCAAAGCCCATGGATCCCTCCGCCGTCAACTCACCCCGCCGACGACCGGCCACTTGTCACTCAGCCTCACCGCCACGA CACCGCGGCGCGCCCACAACCTCACCACCAACCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGAACCCACCGACGCCACGGTCGAGGACCGGTGGTGCCCTCGCCGCGGAAAACCAAAA TCTCGACGTGGTTAGCCGCCGTCTGCTGCGCGATCTTCTGGATCGCGATCTTCCTCGCCGGAATCATAATCCTCGTCGTCTATCTAATTTATCGCCCGCA CAACCCGCGATTCGAAGTCTCCGACGCAACCCTCAACACGGCGTACCTCGACGCCGGCTCCCTGCTAAACGCCGACGTATCCCTGCTGGCGAATTTCACC AACCCAAATCGAAAAGTCACAGTCGATTTCGGGAGCCTGATCGTCGATCTGTACTACGGGACAACTTTGATCGCGACCCAGTTCATTCAGCCGTTCTCGG CGGAGAAAGCTGGGTCGAGATTCGTGAATTTGGAGCTGGTGACCAGCCAGGTGAGGATTCCATTGGAGGACAGCAAAAAGCTTGAAGAAGAGATCAACAA GAATACAGTAACGTTTAATGTGAAGGGTGTTTTCAGGGTTCGATCCCAGCTGGGGAGTTTTTTGGCTTACTCGTATAAGCTCTATGGACATTGCACGATC GTGCTGACGGGGCCGCCAAGTGGCGTCTTACGTGGACGGCGGTGCATAACGAAACGATGA
AA sequence Show only first row Show all	>Lus10011406 pacid=23159227 polypeptide=Lus10011406 locus=Lus10011406.g ID=Lus10011406.BGIv1.0 annot-version=v1.0 MNWISKMASAAAAGVGERQLLCRTQQSRGIRVKVYDGNVERALTVLQRKMQSSGMERLIKKTQRTHLKNSEKRVLAHKNLLHRVKAEDLARKLQDILHKK IRNFSVIPAGPAVFNHDCGSKEASCKQLVSKENSKGGFMNGKQSRLAELLAEIRAKRVAIIRAMRGIFIVITVDGSFSFSDWFMMEGFFLPPFESIRLFK DGDLVRVKRKEKGNLGMMLELVGNLLLENQEFDKVKEVKKVLKKRKAIEEVGSSSKKKKKKNKEKERSSGDRKAKKATSMFVNGDKKDEEDDPKDNELHR NVTKSTETNSGLNGHVDASCTPSETKKEEEKQVSATCYEKPSRKKNRKVNEEPPEMVTDTAEDNEKIENTASCKCNGNGISSSQDDPNSSHKPSGCPVFN QIIDFDKLPPYSNSPKEADIIAYRIVQLTSSWTPEVSSYLVGKISQFNPESNMIKLVAVPKYPLIPETKMEDDEAPEVLPETCILQEDGSLEIEFSSLVE IRAVKNQSSTNDRSIHTSGQGRYSSERRESTNHQDEFSRRVLQEDYDWDISESSGRDQWTLKALRRSAIVMSRHPETNPHFERPLQQPHGSNRDRDHRGH DRGRNHRSSPPHVGRGGGQTTPPPHHQHQHHHHQPDAPHHRRDRDRERGRRSTPPRTPVPIGIAPNTSLPHHHHHHHRPEDPPPHLDNSEHFPLHVQPPH RDENRPESLGPDRPKQGGHFQSPWAIPPPRPHPAHHPDGHHQSPWIPPPSTHPADDRPLVTQPHRHDTAARPQPHHQPPXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXGRTHRRHGRGPVVPSPRKTKISTWLAAVCCAIFWIAIFLAGIIILVVYLIYRPHNPRFEVSDATLNTAYLDAGSLLNADVSLLANFT NPNRKVTVDFGSLIVDLYYGTTLIATQFIQPFSAEKAGSRFVNLELVTSQVRIPLEDSKKLEEEINKNTVTFNVKGVFRVRSQLGSFLAYSYKLYGHCTI VLTGPPSGVLRGRRCITKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26350			unknown protein		Lus10011406 [exp]	0	1
AT2G45520			unknown protein		Lus10009304 [exp]	1.4	0.8514
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	1.4	0.8849
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	2.4	0.8284
AT3G18510			unknown protein		Lus10042971 [exp]	3.0	0.8492
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	5.3	0.8301
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10041117 [exp]	8.4	0.8148
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	11.5	0.8243
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	12.6	0.8287
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	13.0	0.7960
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	14.1	0.7781

Compare expression of checked genes

Lus10011406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.