Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26380 476 / 2e-163 Melibiase family protein (.1) AT5G08380 52 / 7e-07 ATAGAL1 alpha-galactosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006467 [exp] 523 / 0 AT3G26380 455 / 4e-156 Melibiase family protein (.1) Lus10006226 [exp] 480 / 7e-165 AT3G26380 753 / 0.0 Melibiase family protein (.1) Lus10036875 [exp] 473 / 1e-155 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10038325 [exp] 56 / 3e-08 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 50 / 2e-06 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 49 / 9e-06 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10038305 [exp] 48 / 1e-05 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 47 / 2e-05 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10024401 [exp] 42 / 0.0006 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G048400 [exp] 466 / 1e-160 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.008G185300 [exp] 468 / 2e-160 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 448 / 1e-152 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.010G118200 [exp] 56 / 4e-08 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.018G152200 [exp] 55 / 5e-08 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 52 / 6e-07 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 51 / 1e-06 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011407 pacid=23159235 polypeptide=Lus10011407 locus=Lus10011407.g ID=Lus10011407.BGIv1.0 annot-version=v1.0 ATGGAGTTGCAGAGGATGAACAAGTACATCAAAGTACTGGTACCTCTGTTTCTCATACTGGGTTCTCTGTTCTTCTTCTTGGGTTATCGTCTAACCAAAG ATCATCATCATAAGCTGAAAACTAATGATCATGGTGGAGCAATCCTTCCACCAAGAGGATGGAACTCTTACGACTCATTCTGCTGGACAATCTCTGAAGA AGAGTTCTTGCAAAGTGCTTATGTCGTCTCTCAGCGCTTACTCCCCCATGGATACGAGGTAAACACGAAAGCTTGCACAGTTTCGATAAGTCAACCTAAG AGTATAGGTTATGTAATGATGTTTCTTTTTCCAAAGTATGTGGTGCTGGATTACCTATGGTATAGGAAGTTGGAGCCGGGAGCTTCGACTAACTCGAGAG GGTTCGATGTGATCGACGAATGGGGGAGAGTGGTTCCGGATCCTGGTCGATGGCCTTCGTCGGAAGGAGGTAAAGGGTTTGGTAAAGTGAGTGAGATGGT TCATTCAATGGGGCTCAAGTTTGGGATCCACATCATGAGAGGGATAAGTGTTCAAGCTTATGATGCCAACTCACCCATCTTGGATATTGCCAAGGGCGCT GCGTATGAAGAAGACGGCAGGAAATGGAGGGCACAAGACATTGGGATCAAGGAGAAAGTATGTGGATGGATGCCGGAAGGGTTCATGAGTGTCAATACTA GCTTGGGAGCTGCTAAAGCCTTCTTGAAATCAATCCATCACCAGTATGCTGTAGAATGGGGTGTAGACTTCATAAAACATGACTGTGTCTTTGGAGATGA TTTGAGTGTAGATGAGATAACAATTGTCTCAAAGATTCTGAAACAAGCTGATCATCCAATTACGTATTCTCTTTCGCCCGGGACCTCAGTGACTCCATCC ATGGCTAGAAAGATCAGTGGTTTGGCTAATATGTACAGAATAACTGCAGATGATTGGGACAGCTGGAAGGATGTAGCTTCACATTTCAATGTCACAAGGG ATTTCGCTGATGCTGAGATGATAGGAGGCTCAGGGTTACAAGGCAAGTCATGGCCTGACTTGGATATGCTGCCATTAGGATGGCTTACTGATGCAGATTC GAATGTCGGACCACACAGGCAGTCTTGGCTCACTCCAGATGAGCAAAGAACTCAGTTTCCTCTTGGTGCTAGCGGATTCAGATCATGGATCGCGACGGGA AGAGCAGGGGAGATATATCTGGCGTTCTTCAACCTTAACAGCACAGAGAAAAGGGCAAATGTGTCAGCTCAAGTATCAGAGATTGCGGCTAGGGTTTATC CAGGGGGAAAGGTTGGATCTTGTGAAGGGGGAGAGGTTTGGAGTGGGAAGGATATGGGAGTTATGAATGAAACTGTTTCATTGGCTGTGGATGTTCATGG TTGTGCTCTCTTTGTTTTGAATTGTACTGTAAAAACCATGGCCTAA
AA sequence Show only first row Show all	>Lus10011407 pacid=23159235 polypeptide=Lus10011407 locus=Lus10011407.g ID=Lus10011407.BGIv1.0 annot-version=v1.0 MELQRMNKYIKVLVPLFLILGSLFFFLGYRLTKDHHHKLKTNDHGGAILPPRGWNSYDSFCWTISEEEFLQSAYVVSQRLLPHGYEVNTKACTVSISQPK SIGYVMMFLFPKYVVLDYLWYRKLEPGASTNSRGFDVIDEWGRVVPDPGRWPSSEGGKGFGKVSEMVHSMGLKFGIHIMRGISVQAYDANSPILDIAKGA AYEEDGRKWRAQDIGIKEKVCGWMPEGFMSVNTSLGAAKAFLKSIHHQYAVEWGVDFIKHDCVFGDDLSVDEITIVSKILKQADHPITYSLSPGTSVTPS MARKISGLANMYRITADDWDSWKDVASHFNVTRDFADAEMIGGSGLQGKSWPDLDMLPLGWLTDADSNVGPHRQSWLTPDEQRTQFPLGASGFRSWIATG RAGEIYLAFFNLNSTEKRANVSAQVSEIAARVYPGGKVGSCEGGEVWSGKDMGVMNETVSLAVDVHGCALFVLNCTVKTMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	2.0	0.9703
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	2.0	0.9686
AT5G23950			Calcium-dependent lipid-bindin...		Lus10027502 [exp]	2.2	0.9658
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	2.8	0.9677
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	3.5	0.9651
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	4.2	0.9684
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	4.6	0.9634
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	5.3	0.9559
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	5.5	0.9613
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	6.7	0.9616

Compare expression of checked genes

Lus10011407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.