Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67810 149 / 3e-44 SUFE2 sulfur E2 (.1) AT5G50210 108 / 8e-27 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT4G26500 53 / 4e-08 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006468 [exp] 306 / 4e-106 AT1G67810 189 / 1e-59 sulfur E2 (.1) Lus10043314 [exp] 134 / 8e-36 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10019464 [exp] 127 / 2e-33 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10032905 [exp] 59 / 7e-10 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10015605 [exp] 58 / 1e-09 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089500 [exp] 124 / 1e-33 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.015G085300 [exp] 125 / 1e-32 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.011G165400 [exp] 59 / 5e-10 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.001G468300 [exp] 58 / 8e-10 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0233 [flax] [poplar] SufE_NifU PF02657 [flax] [poplar] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Lus10011408 pacid=23159236 polypeptide=Lus10011408 locus=Lus10011408.g ID=Lus10011408.BGIv1.0 annot-version=v1.0 ATGAACTCCTCCGCCGCCGTCTCCTTCAATTCTCCCAATCTCTCCCCCTCCTTCACGAATAAAATATTCAGCACAAACCCATTCCACCTCCACCGCCACG GATTCATACCCAGATCGCGAATCCTGCTGATTTCATCTCTCGAACGGAGCTTCCCGCCGCCGCCGCCGGCGGCAAGGGAGAAAAAACCGGATCTTTCCGT CCATTTCGCCACCGGCGATAGTCCTACGGCGTTGGCGGTTTCGGACGTCGGCGATCGGGTCCAGATCCTTGTGGCGGAGTTCGCGGCGCTGAAGGAGCCG CTGGACCGGGTCAAACGGCTGCTGGACTACGCAGGTCGGGTCCCGCCGTTCGACGAGTCGGATCGAGTGGATGCGAATCGGGTCACGGGGTGTACGACCC AGGCGAGGTTTAGGGCCGACAGCGATTCGGAGATCACCAAAGGGTTCGTTTCGTGCCTGGTGTGGCTGCTCGACGGGGCGTCGCCGGAGGATGTGGCGGC GGTGGAGGCGGAGGATTTGGAGGCGATGAACGTCGGGTTCAATGGGAAGGCTCCGTCGAGGGTGAGGACTTGGCAGAATGTGTTGGATAGTATGCAAAAG AGGGCTTTGGATTTGAAGGGTAATTGTCACGCCGGCAGCCGGCAGGGCTTCTGTCCACGGTGGAGACTCTCGCCGGAATCCTCTCTGCCGGCCGAGGTAT ATATATAG
AA sequence Show only first row Show all	>Lus10011408 pacid=23159236 polypeptide=Lus10011408 locus=Lus10011408.g ID=Lus10011408.BGIv1.0 annot-version=v1.0 MNSSAAVSFNSPNLSPSFTNKIFSTNPFHLHRHGFIPRSRILLISSLERSFPPPPPAAREKKPDLSVHFATGDSPTALAVSDVGDRVQILVAEFAALKEP LDRVKRLLDYAGRVPPFDESDRVDANRVTGCTTQARFRADSDSEITKGFVSCLVWLLDGASPEDVAAVEAEDLEAMNVGFNGKAPSRVRTWQNVLDSMQK RALDLKGNCHAGSRQGFCPRWRLSPESSLPAEVYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	0	1
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042481 [exp]	1.4	0.8874
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	1.4	0.8751
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	2.0	0.8589
AT2G18540			RmlC-like cupins superfamily p...		Lus10037937 [exp]	10.1	0.7653
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	11.0	0.8031
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042482 [exp]	13.1	0.7753
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	13.6	0.7889
					Lus10013609 [exp]	15.2	0.7604
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	15.3	0.8540
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	17.7	0.7645

Compare expression of checked genes

Lus10011408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.