Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 74 / 1e-14 F-box/RNI-like superfamily protein (.1) AT1G60400 69 / 5e-13 F-box/RNI-like superfamily protein (.1) AT2G26030 69 / 6e-13 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT5G44980 67 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66290 64 / 3e-11 F-box/RNI-like superfamily protein (.1) AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 64 / 5e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G44940 63 / 5e-11 F-box/RNI-like superfamily protein (.1) AT1G66310 63 / 9e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02910 61 / 2e-10 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004655 [exp] 291 / 7e-95 AT2G26030 63 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) Lus10011410 [exp] 228 / 4e-73 AT1G69630 69 / 9e-13 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 132 / 1e-35 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002819 [exp] 130 / 4e-35 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) Lus10042477 [exp] 129 / 1e-34 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 127 / 1e-33 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10024695 [exp] 127 / 1e-33 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 125 / 1e-32 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 122 / 4e-32 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 104 / 2e-25 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 99 / 2e-23 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 76 / 2e-15 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 63 / 3e-11 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104200 [exp] 59 / 2e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 57 / 5e-09 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 56 / 2e-08 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.017G146500 [exp] 56 / 2e-08 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 54 / 4e-08 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 54 / 8e-08 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011409 pacid=23159268 polypeptide=Lus10011409 locus=Lus10011409.g ID=Lus10011409.BGIv1.0 annot-version=v1.0 ATGATCGTGCCAATTAAGATGAACGCCGGCGAAGACGATGATGTTGACCGGTTGACCCAGCTTCCAGACTTGATCATCCACCACATTCTCTCGTCCCTCG ACACCAAATCCTCCATCCGGACCTCTGTACTGTCACGGTCCTGGAAGTCCGCATGGAAACACGTCCCCGTCTTGGACCTCCACGGACTTTCCTTCAAAAC CTTTGTGGGCTTCGCGACCTTTCTCGACAAGATAATATCGTCCTTTTTCGATATTAATCTCCGCAAGATTAGCTACTACCAAGATCCACACAAAATGGAC TACGATCGGATCGACCTCGTCATCAACTATGCAGCATCTCACGGTGCTGAAGCATCGATCCATAGCGATTCGAGAAATTCATACCGCTCGTTCGGGCAGT CCACGATCAGCTCGAATCCAAATCTAAAAACTCTGAAGTTATATCGGTTTTCGATCCAATCGGCTTGTTTGGGTTTTCCTCTGCTCACAAGTTTGAACCT GTATAATTGTTGGGTCCCCTGGTGGTCTGACCCTTTTCGTAGATTCCCATGTTTGAGGAATCTAGTAGTGCTTGATTCCAAGTGTTACAGCGATCGTGCG AGAGTTTCAGGACTCGATTTGATTAGCTTGGAGCTCAGGTTTCCTTGCCAGGTTGAGATCGAAATAGATCCACCGAAACTCGAGTCGTTCACTCTTCACT TCCCTGTGGGAAGTGATCTTCCTCGTTTCGGATTGATGATGAACGTCCCTTCTCTAGCTCGTCTGAGATTCTACGTCGATTGGGGAAGTGTGAGATACAA GCTTGAGAATTTTATGTTCATCTTCGAATCTTTTCGGAATGTCAAATTTATATCGATAAATTCTTGGGTTATTCGGGATGTTAGTTTAGACGAAGAATGC GAAGGAGTTGAGGACATAGTAAACCAACTTCATGGTATGCTTCTATAG
AA sequence Show only first row Show all	>Lus10011409 pacid=23159268 polypeptide=Lus10011409 locus=Lus10011409.g ID=Lus10011409.BGIv1.0 annot-version=v1.0 MIVPIKMNAGEDDDVDRLTQLPDLIIHHILSSLDTKSSIRTSVLSRSWKSAWKHVPVLDLHGLSFKTFVGFATFLDKIISSFFDINLRKISYYQDPHKMD YDRIDLVINYAASHGAEASIHSDSRNSYRSFGQSTISSNPNLKTLKLYRFSIQSACLGFPLLTSLNLYNCWVPWWSDPFRRFPCLRNLVVLDSKCYSDRA RVSGLDLISLELRFPCQVEIEIDPPKLESFTLHFPVGSDLPRFGLMMNVPSLARLRFYVDWGSVRYKLENFMFIFESFRNVKFISINSWVIRDVSLDEEC EGVEDIVNQLHGMLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011409 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10020064 [exp]	2.6	0.7269
					Lus10034814 [exp]	8.5	0.6327
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	18.2	0.6228
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	19.9	0.6036
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	21.3	0.6221
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	23.0	0.6125
					Lus10038304 [exp]	24.9	0.6014
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	26.0	0.6123
AT1G25275			unknown protein		Lus10004192 [exp]	27.0	0.5754
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	28.6	0.6061

Compare expression of checked genes

Lus10011409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.