Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 69 / 1e-12 F-box/RNI-like superfamily protein (.1) AT5G22730 68 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56810 67 / 4e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G26030 64 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT1G66290 64 / 3e-11 F-box/RNI-like superfamily protein (.1) AT5G38396 64 / 4e-11 F-box/RNI-like superfamily protein (.1) AT5G56420 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G60400 64 / 5e-11 F-box/RNI-like superfamily protein (.1) AT5G02910 62 / 1e-10 F-box/RNI-like superfamily protein (.1.2) AT1G16940 61 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011409 [exp] 228 / 4e-73 AT1G69630 74 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10004655 [exp] 219 / 4e-67 AT2G26030 63 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) Lus10034161 [exp] 140 / 8e-39 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 137 / 2e-37 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 138 / 3e-36 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 134 / 5e-36 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 133 / 1e-35 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10023037 [exp] 130 / 1e-35 AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 132 / 2e-35 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 98 / 6e-23 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 94 / 2e-21 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 92 / 8e-21 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 72 / 9e-14 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 71 / 2e-13 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 67 / 2e-12 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 62 / 1e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 57 / 7e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 56 / 1e-08 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G163866 [exp] 55 / 3e-08 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10011410 pacid=23159264 polypeptide=Lus10011410 locus=Lus10011410.g ID=Lus10011410.BGIv1.0 annot-version=v1.0 ATGAATACTGGGGAAGAATATGATGCTACTGACAGGTTGACCCAGCTTCCGGACTCGATCATTCACCACATCCTTTCGTTCCTCGACACCAAATCCTCCG TCCGGACCTCTATGTTGTCGCGGCCGTGGAAGTCCGCGTGGAAACACGTCTCCGTCCTCAATCTCCACGAACAATCCTTCCAAAATTTCCCGAGCTTCTC AATCTTTCTCGACAAGATATCGTCCCTCCGTTGCCACGAGATTAATCTCCGCAAAATTAGCTACTACCATCATTCATACTCACGATGGGACCGTGATCGG ATCGAACTGGTCATCAAGTACGCAGCCGCCCACGGTGCTGAAGCCTCAATTTCTAACGAATATTTCATGAGCTCCACCTACCTCTGGCCTCGGTGGACAA GGAGTAGCTCGAATTGCCGCAATCTGAAAGCTCTGACCATATCTCGGGTCTGCCTCAACGACAGTGACCTCGGACTTGGTTTTTCAATGCTCACGAGTTT GAAAATGTACGATATCCGTTTCGAGACCACATACCCCTTTCGTGAATTTCCGTGCTTGAAGGATCTGGTCGTGCACAACTTTTGGGTTGATGGTTGTTTT AGTCTCAAGGTTTCTGGACCCCAATTGCTTAGCTTGGACCTCAGAGCTGAAAATGACAAACGTGTCCTCGAGATTGAAATGGATGCACCGAAACTCGAGT CATTCACCTTCGATTTCCGGTATGTCCAGCTTCCTCTTTTCGGAGAGATGAGCGTCCCTTCTCTAGCTCGTGGGGATTTCTACCTTAATTTCAGACGATT CAAGCCTGAGGATTTCATGGCCATCGTCCTACTGTTTCAATGTGTAAGATCTGTAGCAGTGAATTCTTGTATTATTTGGGATCTAGACCGAGAAAATCGT TTGAATTTCGACGATGACCGAGTAGTTGAGCTCATAGCAAACCGAATTCATGAAGTAGCCAGTAAGCCTTGA
AA sequence Show only first row Show all	>Lus10011410 pacid=23159264 polypeptide=Lus10011410 locus=Lus10011410.g ID=Lus10011410.BGIv1.0 annot-version=v1.0 MNTGEEYDATDRLTQLPDSIIHHILSFLDTKSSVRTSMLSRPWKSAWKHVSVLNLHEQSFQNFPSFSIFLDKISSLRCHEINLRKISYYHHSYSRWDRDR IELVIKYAAAHGAEASISNEYFMSSTYLWPRWTRSSSNCRNLKALTISRVCLNDSDLGLGFSMLTSLKMYDIRFETTYPFREFPCLKDLVVHNFWVDGCF SLKVSGPQLLSLDLRAENDKRVLEIEMDAPKLESFTFDFRYVQLPLFGEMSVPSLARGDFYLNFRRFKPEDFMAIVLLFQCVRSVAVNSCIIWDLDRENR LNFDDDRVVELIANRIHEVASKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	0	1
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	1.0	0.9995
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	1.4	0.9894
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	2.0	0.9808
					Lus10025782 [exp]	3.0	0.9837
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	5.0	0.9593
AT3G53240		AtRLP45	receptor like protein 45 (.1)		Lus10043328 [exp]	8.3	0.7004
					Lus10021407 [exp]	10.1	0.9247
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	10.6	0.8909
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	11.2	0.8909
					Lus10038304 [exp]	11.4	0.7806

Compare expression of checked genes

Lus10011410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.