Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23770 110 / 1e-27 F-box family protein (.1) AT1G23780 102 / 2e-24 F-box family protein (.1) AT1G70360 81 / 3e-18 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033762 [exp] 345 / 9e-116 AT1G23780 199 / 4e-57 F-box family protein (.1) Lus10012441 [exp] 342 / 9e-115 AT1G23780 215 / 3e-63 F-box family protein (.1) Lus10006139 [exp] 73 / 3e-16 AT1G23780 62 / 3e-12 F-box family protein (.1) Lus10006138 [exp] 45 / 5e-06 AT1G23770 53 / 3e-09 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G109700 [exp] 186 / 7e-55 AT1G23780 244 / 2e-74 F-box family protein (.1) Potri.015G020600 [exp] 100 / 3e-24 AT1G23780 0 / 1 F-box family protein (.1) Potri.017G134500 [exp] 63 / 5e-12 AT1G23780 0 / 1 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011411 pacid=23159263 polypeptide=Lus10011411 locus=Lus10011411.g ID=Lus10011411.BGIv1.0 annot-version=v1.0 ATGCGGTTTTCTTCTGAGTCGGGATTTGTCGGGCATGATTCCCTCACTGGGAGCAGAGTTCATCAGCCTTGGAAGAAGCAGTCTACATTGTCAATATTGT ATACTCTCCCTGAACTGCAGGGCAAGGACGTGTCGGTTGCATTGAAGTTCCAAACTTTGGGCAACTTTTTGAATGCTGTCGGTGCTCTGGCTACTGGAGG CTCAGATATGCATCGCATGTCCTTAAATGCAAGCACTTATGCCCCGAGTCTGCGTCAGATCTGGCAACTGAATTCTTGCGAAAACAACGAGCTTTTCGAG TTGTGGAAAGATGTCAAGGATGGGCTTTGTCTTCCGTTATTGATCGATCTGTGTGACAAGGCCGGTTTTCCTATGCCATCGTGTTTCTCGAGCCTCCCAA CTGATCTCAAGCTCAGCATTTTGACGTTGCTTCCTGGAATTGGCATTGCACGGATGGAGTGTGTTTCCATAGAGACGCGATGTCTGTCGTCGTCGAACAA TGAGCTGTGGAAGCAGAAGTTTGAAGAGGAGCTTTGGAATGCGCCACTCCAAACTGGGAATTGGAAACAGAACTTTGCTACCGAAGTGTTGATCAAGAAG AAGTGCACAAGGGATGCAATGCTTAGAGAAAGACATAGCCGTTATCCACCGATCTGGGGTGGTGGATATCATGACATCACCCCGGGACTGGGTATCCCGT ATCCTTTCCCGCGTGTTGTTCATGACATCATCCCGGGACAGGGCATCCCGCATCCTTTTCTGGGTGTCGGTCATGACATCATCCCGGGACTGGACATCCA GTATCCTTTTCCCGACCCGACGTTGGTCATGACATTATTCCGAGACGCAACCCTCATATTGTGTATTTACAGACCTGAGCGGTAA
AA sequence Show only first row Show all	>Lus10011411 pacid=23159263 polypeptide=Lus10011411 locus=Lus10011411.g ID=Lus10011411.BGIv1.0 annot-version=v1.0 MRFSSESGFVGHDSLTGSRVHQPWKKQSTLSILYTLPELQGKDVSVALKFQTLGNFLNAVGALATGGSDMHRMSLNASTYAPSLRQIWQLNSCENNELFE LWKDVKDGLCLPLLIDLCDKAGFPMPSCFSSLPTDLKLSILTLLPGIGIARMECVSIETRCLSSSNNELWKQKFEEELWNAPLQTGNWKQNFATEVLIKK KCTRDAMLRERHSRYPPIWGGGYHDITPGLGIPYPFPRVVHDIIPGQGIPHPFLGVGHDIIPGLDIQYPFPDPTLVMTLFRDATLILCIYRPER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23770			F-box family protein (.1)		Lus10011411 [exp]	0	1
					Lus10023803 [exp]	6.2	0.8532
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020041 [exp]	9.3	0.8400
					Lus10015488 [exp]	14.0	0.8279
AT5G45275			Major facilitator superfamily ...		Lus10033280 [exp]	19.7	0.8162
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10039184 [exp]	26.1	0.7889
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10021539 [exp]	27.3	0.7681
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	27.5	0.8156
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	29.4	0.8041
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006303 [exp]	29.7	0.8006
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	31.7	0.7984

Compare expression of checked genes

Lus10011411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.